miaViz-package | miaViz - Microbiome Analysis Plotting and Visualization |
colTreeData | Adding information to tree data in 'TreeSummarizedExperiment' |
colTreeData-method | Adding information to tree data in 'TreeSummarizedExperiment' |
colTreeData<- | Adding information to tree data in 'TreeSummarizedExperiment' |
colTreeData<--method | Adding information to tree data in 'TreeSummarizedExperiment' |
col_graph | miaViz example data |
combineTreeData | Adding information to tree data in 'TreeSummarizedExperiment' |
combineTreeData-method | Adding information to tree data in 'TreeSummarizedExperiment' |
mia-datasets | miaViz example data |
mia-plot-args | Additional arguments for plotting |
miaViz | miaViz - Microbiome Analysis Plotting and Visualization |
plotAbundance | Plotting abundance data |
plotAbundance-method | Plotting abundance data |
plotAbundanceDensity | Plot abundance density |
plotAbundanceDensity-method | Plot abundance density |
plotCCA | Plot RDA or CCA object |
plotCCA-method | Plot RDA or CCA object |
plotColGraph | Plotting igraph objects with information from a 'SummarizedExperiment' |
plotColGraph-method | Plotting igraph objects with information from a 'SummarizedExperiment' |
plotColTile | Plot factor data as tiles |
plotColTile-method | Plot factor data as tiles |
plotColTree | Plotting tree information enriched with information |
plotColTree-method | Plotting tree information enriched with information |
plotDMN | Plotting Dirichlet-Multinomial Mixture Model data |
plotDMNFit | Plotting Dirichlet-Multinomial Mixture Model data |
plotDMNFit-method | Plotting Dirichlet-Multinomial Mixture Model data |
plotFeaturePrevalence | Plot prevalence information |
plotFeaturePrevalence-method | Plot prevalence information |
plotGraph | Plotting igraph objects with information from a 'SummarizedExperiment' |
plotPrevalence | Plot prevalence information |
plotPrevalence-method | Plot prevalence information |
plotPrevalentAbundance | Plot prevalence information |
plotPrevalentAbundance-method | Plot prevalence information |
plotRDA | Plot RDA or CCA object |
plotRDA-method | Plot RDA or CCA object |
plotRowGraph | Plotting igraph objects with information from a 'SummarizedExperiment' |
plotRowGraph-method | Plotting igraph objects with information from a 'SummarizedExperiment' |
plotRowTile | Plot factor data as tiles |
plotRowTile-method | Plot factor data as tiles |
plotRowTree | Plotting tree information enriched with information |
plotRowTree-method | Plotting tree information enriched with information |
plotSeries | Plot Series |
plotSeries-method | Plot Series |
plotTaxaPrevalence | Plot prevalence information |
plotTaxaPrevalence-method | Plot prevalence information |
plotTree | Plotting tree information enriched with information |
rowTreeData | Adding information to tree data in 'TreeSummarizedExperiment' |
rowTreeData-method | Adding information to tree data in 'TreeSummarizedExperiment' |
rowTreeData<- | Adding information to tree data in 'TreeSummarizedExperiment' |
rowTreeData<--method | Adding information to tree data in 'TreeSummarizedExperiment' |
row_graph | miaViz example data |
row_graph_order | miaViz example data |
treeData | Adding information to tree data in 'TreeSummarizedExperiment' |