An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family of methods

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Documentation for package ‘limpca’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

data2LmpDataList	Converts data to a lmpDataList.
limpca	Linear modeling of high-dimensional designed data based on ASCA/APCA family of methods
lmpBootstrapTests	Tests the significance of model effects by bootstrap.
lmpContributions	Summary of the contributions of each effect
lmpEffectMatrices	Computes the effect matrices
lmpEffectPlot	Effect plot
lmpLoading1dPlot	Loadings represented on a line plot.
lmpLoading2dPlot	Loading plots on a 2D scatter plot
lmpModelMatrix	Creates the model matrix 'X'
lmpPcaEffects	PCA on the effect matrices
lmpScorePlot	Score plots of effect matrices
lmpScoreScatterPlotM	Scatterplot matrix of effect matrices scores
lmpScreePlot	Scree Plot
pcaBySvd	Singular Value Decomposition for PCA analysis
pcaLoading1dPlot	Loadings represented on a line plot.
pcaLoading2dPlot	Loading plots on a 2D scatter plot
pcaScorePlot	Score plots
pcaScreePlot	Scree Plot
plotDesign	Plot of the design matrix
plotLine	Line plot
plotMeans	Means plot
plotScatter	Scatter plot
plotScatterM	Scatter plot matrix
trout	trout: the Rainbow trouts transcriptomic dataset
UCH	UCH: the Urine Citrate-Hippurate metabolomic dataset