iSEE extension for panels related to pathway analysis

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Documentation for package ‘iSEEpathways’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.cacheCommonInfo-method	The FgseaEnrichmentPlot class
.cacheCommonInfo-method	The PathwaysTable class
.createObservers-method	The FgseaEnrichmentPlot class
.createObservers-method	The PathwaysTable class
.defineDataInterface-method	The FgseaEnrichmentPlot class
.defineDataInterface-method	The PathwaysTable class
.defineInterface-method	The FgseaEnrichmentPlot class
.defineInterface-method	The PathwaysTable class
.defineOutput-method	The FgseaEnrichmentPlot class
.fullName-method	The FgseaEnrichmentPlot class
.fullName-method	The PathwaysTable class
.generateOutput-method	The FgseaEnrichmentPlot class
.generateTable-method	The PathwaysTable class
.isBrushable-method	The FgseaEnrichmentPlot class
.multiSelectionActive-method	The FgseaEnrichmentPlot class
.multiSelectionActive-method	The PathwaysTable class
.multiSelectionCommands-method	The FgseaEnrichmentPlot class
.multiSelectionCommands-method	The PathwaysTable class
.multiSelectionDimension-method	The FgseaEnrichmentPlot class
.multiSelectionDimension-method	The PathwaysTable class
.panelColor-method	The FgseaEnrichmentPlot class
.panelColor-method	The PathwaysTable class
.refineParameters-method	The FgseaEnrichmentPlot class
.refineParameters-method	The PathwaysTable class
.renderOutput-method	The FgseaEnrichmentPlot class
.showSelectionDetails-method	The FgseaEnrichmentPlot class
.showSelectionDetails-method	The PathwaysTable class
embedPathwaysResults	Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object
embedPathwaysResults-method	The iSEEfgseaResults class
embedPathwaysResults-method	Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object
embedPathwaysResultsMethods	Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object
featuresStats	Generics for Pathway Analysis Results
featuresStats-method	The iSEEfgseaResults class
FgseaEnrichmentPlot	The FgseaEnrichmentPlot class
FgseaEnrichmentPlot-class	The FgseaEnrichmentPlot class
initialize-method	The FgseaEnrichmentPlot class
initialize-method	The PathwaysTable class
iSEEfgseaResults	The iSEEfgseaResults class
iSEEfgseaResults-class	The iSEEfgseaResults class
iSEEpathwaysResults	The iSEEpathwaysResults class
iSEEpathwaysResults-class	The iSEEpathwaysResults class
pathway-generics	Generics for Pathway Analysis Results
pathwaysList	Generics for Pathway Analysis Results
pathwaysList-method	The iSEEfgseaResults class
pathwaysResults	Extract contrast results embedded in a SummarizedExperiment object
pathwaysResultsNames	Extract contrast results embedded in a SummarizedExperiment object
PathwaysTable	The PathwaysTable class
PathwaysTable-class	The PathwaysTable class
pathwayType	Generics for Pathway Analysis Results
pathwayType-method	The iSEEfgseaResults class
show-method	The iSEEpathwaysResults class
simulateExampleData	Simulate Example Data
utils-SummarizedExperiment	Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object