Package: escheR
Title: Unified multi-dimensional visualizations with Gestalt principles
Version: 1.5.0
Authors@R: c(
    person("Boyi", "Guo",
           email = "boyi.guo.work@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2950-2349")),
    person(c("Stephanie", "C."), "Hicks",  role = c("aut"), 
            email = "shicks19@jhu.edu", 
            comment = c(ORCID = "0000-0002-7858-0231")),
    person(c("Erik", "D."), "Nelson",
           email = "erik.nelson116@gmail.com", role = c("ctb"),
           comment = c(ORCID = "0000-0001-8477-0982"))
            )
Description: The creation of effective visualizations is a fundamental component
    of data analysis. In biomedical research, new challenges are emerging to 
    visualize multi-dimensional data in a 2D space, but current data 
    visualization tools have limited capabilities. To address this problem,
    we leverage Gestalt principles to improve the design and interpretability
    of multi-dimensional data in 2D data visualizations, layering aesthetics
    to display multiple variables. The proposed visualization can be applied
    to spatially-resolved transcriptomics data, but also broadly to data
    visualized in 2D space, such as embedding visualizations. We provide this
    open source R package escheR, which is built off of the state-of-the-art
    ggplot2 visualization framework and can be seamlessly integrated into
    genomics toolboxes and workflows.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: Spatial, SingleCell, Transcriptomics, Visualization,
        Software
Depends: ggplot2, R (>= 4.3)
Imports: SpatialExperiment (>= 1.6.1), SingleCellExperiment, rlang,
        SummarizedExperiment
BugReports: https://github.com/boyiguo1/escheR/issues
URL: https://github.com/boyiguo1/escheR
Suggests: STexampleData, BumpyMatrix, knitr, rmarkdown, BiocStyle,
        ggpubr, scran, scater, scuttle, Seurat, hexbin
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/escheR
git_branch: devel
git_last_commit: f8f3dab
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.20
Date/Publication: 2024-05-17
NeedsCompilation: no
Packaged: 2024-05-17 22:59:00 UTC; biocbuild
Author: Boyi Guo [aut, cre] (<https://orcid.org/0000-0003-2950-2349>),
  Stephanie C. Hicks [aut] (<https://orcid.org/0000-0002-7858-0231>),
  Erik D. Nelson [ctb] (<https://orcid.org/0000-0001-8477-0982>)
Maintainer: Boyi Guo <boyi.guo.work@gmail.com>
Built: R 4.4.0; ; 2024-05-18 17:26:20 UTC; unix
