scRNAseq demultiplexing using cell hashing and SNPs

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Documentation for package ‘demuxSNP’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_snps	Add SNPs to SingleCellExperiment object
commonvariants_1kgenomes_subset	Sample vcf file
common_genes	Return a character vector of top n most frequent genes from a SingleCellExperiment object.
high_conf_calls	Run demuxmix to determine high-confidence calls
multiplexed_scrnaseq_sce	SingleCellExperiment object containing multiplexed RNA and HTO data from six biological smamples
reassign	Reassign cells using knn
reassign_balanced	Reassign cells using balanced knn with jaccard distance
reassign_centroid	Reassign cells based on SNPs
reassign_jaccard	Reassign cells using knn with jaccard distance
subset_vcf	Subset common variants vcf file to only SNPs seen in 'top_genes'
vartrix_consensus_snps	Sample VarTrix output