Signature discovery from omics data


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Documentation for package ‘biosigner’ version 1.34.0

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biosigner-package Molecular signature discovery from omics data
biosign Builds the molecular signature.
biosign,MultiDataSet_method Builds the molecular signature.
biosign-class Class "biosign"
biosign-method Builds the molecular signature.
biosign-method getEset method
biosigner Molecular signature discovery from omics data
biosignMultiDataSet-class Class "biosignMultiDataSet"
biosignMultiDataSet-method getMset method
diaplasma Analysis of plasma from diabetic patients by LC-HRMS
getAccuracyMN Accuracies of the full model and the models restricted to the signatures
getAccuracyMN-method Accuracies of the full model and the models restricted to the signatures
getBiosign Getting the biosigner signature from the SummarizedExperiment object
getBiosign-method Getting the biosigner signature from the SummarizedExperiment object
getEset getEset method
getEset, getEset method
getEset-method getEset method
getMset getMset method
getMset, getMset method
getMset-method getMset method
getSignatureLs Signatures selected by the models
getSignatureLs-method Signatures selected by the models
plot-method Plot method for 'biosign' signature objects
plot.biosign Plot method for 'biosign' signature objects
plot.biosignMultiDataSet Plot method for 'biosign' signature objects
predict-method Predict method for 'biosign' signature objects
predict.biosign Predict method for 'biosign' signature objects
show-method Show method for 'biosign' signature objects
show.biosign Show method for 'biosign' signature objects