Context-Aware Transcript Quantification from Long Read RNA-Seq data

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Documentation for package ‘bambu’ version 3.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bambu	long read isoform reconstruction and quantification
compareTranscripts	compare alternatively-spliced transcripts
plotBambu	plot.bambu
prepareAnnotations	prepare reference annotations for long read RNA-Seq analysis with Bambu
readFromGTF	convert a GTF file into a GRangesList
trainBambu	Function to train a model for use on other data
transcriptToGeneExpression	transcript to gene expression
writeBambuOutput	Write Bambu results to GTF and transcript/gene-count files
writeToGTF	write GRangeslist into GTF file