adverSCarial, generate and analyze the vulnerability of scRNA-seq classifier to adversarial attacks

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Documentation for package ‘adverSCarial’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

advCGD	Implementation of the IDG4C algorithm.
advChar	adverSCarial class
advChar-class	adverSCarial class
advGridMinChange	Grid search of min change adversarial attack. Tries each combination on a cluster, given a list of genes and a list of modifications.
advList	adverSCarial class
advList-class	adverSCarial class
advMaxChange	Find a max change adversarial attack. It finds the longer list of genes you can modify on a cluster without changing its classification.
advModifications	Returns a modified RNA expression DelayedMatrix, or a modified SingleCellExperiment, for a given cluster, for a given modification.
advRandWalkMinChange	Random walk search of min change adversarial attack.
advSingleGene	Find a one gene min change adversarial attack list. A one gene min change adversarial attack refers to the modification of a single gene within a cluster, leading to a change in its classification. The function returns a list of genes/new classification.
getSignGenes	The function getSignGenes orders the genes by maximizing the significance of the gene to differentiate the clusters and ensures that they represent at most the variations across all possible pairs of clusters.
matrixFromSCE	Returns the RNA expression matrix from a SingleCellExperiment with unique hgnc gene names in columns
maxChangeOverview	Gives an overview of the susceptibility to max change attacks, for each cell type, for a given list of modifications.
MClassifier	Example cell type classifier for pbmc clustered datasets.
predictWithNewValue	Returns a classification and an odd value from a RNA expression DelayedMatrix or a SingleCellExperiment object, for given genes, for a given cluster, for a given modification.
sceConvertToHGNC	Returns a SingleCellExperiment object keeping unique HGNC gene
singleGeneOverview	Gives an overview of the susceptibility to single gene attacks, for each cell type, for a given list of modifications.