.cross_variogram | Compute variograms |
.cross_variogram_map | Compute variograms |
.variogram | Compute variograms |
.variogram_bv | Compute variograms |
.variogram_map | Compute variograms |
annotGeometryMoransI | Univariate spatial stiatistics |
annotGeometryUnivariate | Univariate spatial stiatistics |
args_not_check | SFEMethod class |
args_not_check-method | SFEMethod class |
calculateBivariate | Bivariate spatial statistics |
calculateBivariate-method | Bivariate spatial statistics |
calculateMoransI | Univariate spatial stiatistics |
calculateMoransI-method | Univariate spatial stiatistics |
calculateMultivariate | Multivariate spatial data analysis |
calculateMultivariate-method | Multivariate spatial data analysis |
calculateUnivariate | Univariate spatial stiatistics |
calculateUnivariate-method | Univariate spatial stiatistics |
clusterCorrelograms | Find clusters of correlogram patterns |
clusterMoranPlot | Find clusters on the Moran plot |
clusterVariograms | Cluster variograms of multiple features |
colDataMoransI | Univariate spatial stiatistics |
colDataUnivariate | Univariate spatial stiatistics |
colGeometryMoransI | Univariate spatial stiatistics |
colGeometryUnivariate | Univariate spatial stiatistics |
ditto_colors | Colorblind friendly palette from dittoSeq |
ElbowPlot | Plot the elbow plot or scree plot for PCA |
fun | SFEMethod class |
fun-method | SFEMethod class |
getDivergeRange | Get beginning and end of palette to center a divergent palette |
info | SFEMethod class |
info-method | SFEMethod class |
is_joint | SFEMethod class |
is_joint-method | SFEMethod class |
is_local | SFEMethod class |
is_local-method | SFEMethod class |
listSFEMethods | List all spatial methods in Voyager package |
moranBounds | Compute the bounds of Moran's I given spatial neighborhood graph |
moranPlot | Use ggplot to plot the moran.plot results |
multispati_rsp | A faster implementation of MULTISPATI PCA |
plotAnnotGraph | Plot spatial graphs |
plotCellBin2D | Plot cell density as 2D histogram |
plotColDataFreqpoly | Plot frequency polygons for colData and rowData columns |
plotColDataHistogram | Plot histograms for colData and rowData columns |
plotColGraph | Plot spatial graphs |
plotCorrelogram | Plot correlogram |
plotCrossVariogram | Plot cross variogram |
plotCrossVariogramMap | Plot cross variogram map |
plotDimLoadings | Plot top PC loadings of genes |
plotGeometry | Plot geometries without coloring |
plotImage | Show image without plotting geometries |
plotLocalResult | Plot local results |
plotMoranMC | Plot Moran/Geary Monte Carlo results |
plotRowDataFreqpoly | Plot frequency polygons for colData and rowData columns |
plotRowDataHistogram | Plot histograms for colData and rowData columns |
plotSpatialFeature | Plot gene expression in space |
plotTxBin2D | Plot transcript spot density as 2D histogram |
plotVariogram | Plot variogram |
plotVariogramMap | Plot variogram maps |
reducedDimMoransI | Univariate spatial stiatistics |
reducedDimUnivariate | Univariate spatial stiatistics |
reorganize_fun | SFEMethod class |
reorganize_fun-method | SFEMethod class |
runBivariate | Bivariate spatial statistics |
runMoransI | Univariate spatial stiatistics |
runMultivariate | Multivariate spatial data analysis |
runUnivariate | Univariate spatial stiatistics |
SFEMethod | SFEMethod class |
SFEMethod-class | SFEMethod class |
spatialReducedDim | Plot dimension reduction components in space |
use_graph | SFEMethod class |
use_graph-method | SFEMethod class |
use_matrix | SFEMethod class |
use_matrix-method | SFEMethod class |
variogram-internal | Compute variograms |