RPA: Robust Probabilistic Averaging for probe-level analysis
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Documentation for package ‘RPA’ version 1.61.0
Help Pages
| RPA-package | RPA: probabilistic analysis of probe reliability and gene expression |
| calculate.rpa | RPA with HITChip |
| collect.hyperparameters | collect.hyperparameters |
| d.update.fast | Fast d update |
| estimate.affinities | estimate.affinities |
| estimate.hyperparameters | estimate.hyperparameters |
| frpa | frpa |
| get.batches | get.batches Split data into batches |
| get.probe.matrix | get.probe.matrix |
| get.probe.parameters | get.probe.parameters |
| get.probeset | Get probeset |
| hyperparameter.update | hyperparameter.update |
| n.phylotypes.per.oligo | n.phylotypes.per.oligo |
| online.quantile | online.quantile Quantile normalization tools for online preprocessing. Estimate quantiles for quantile normalization based on subset of the data (random, or specified by the user). |
| probe.parameters.tolist | probe.parameters.tolist |
| probe.performance | Probe performance |
| probeplot | probeplot Plot RPA results and probe-level data for a specified probeset. |
| probetable | probetable |
| RPA | RPA: probabilistic analysis of probe reliability and gene expression |
| rpa | rpa |
| rpa.complete | Complete RPA preprocessing |
| rpa.fit | RPA fit |
| RPA.iteration | RPA iteration |
| rpa.online | rpa.online |
| rpa.plot | rpa.plot |
| RPA.preprocess | RPA preprocessing |
| rpa.summarize | rpa.summarize |
| rpaplot | rpaplot Plot RPA results and probe-level data for a specified probeset. |
| sample.probeset | sample.probeset |
| summarize.batch | summarize.batch |
| summarize.batches | summarize.batches |
| summarize.rpa | RPA summarization |
| summarize.sum | Sum-based probe summarization |
| summarize_probedata | Summarize probedata |
| updating.hyperparameters | updating hyperparameters |