An R package for qualitative biclustering in support of gene co-expression analyses

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Documentation for package ‘QUBIC’ version 1.33.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BCQU	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
bcqu	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
BCQU-class	Class BCQU.
BCQUD	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
BCQUD-class	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
biclust-method	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
network	Construction and visualization of co-expression network
qdiscretize	Create a qualitative discrete matrix for a given gene expression matrix
Qnetwork	Construction and visualization of co-expression network
QUBIC	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
qubic	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
QUBICD	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
qubiclust	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
qubiclust_d	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
qubic_d	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
QUD	QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data
qudiscretize	Create a qualitative discrete matrix for a given gene expression matrix
quheatmap	Visualization of identified biclusters
qunet2xml	Convert newwork to XGMML
Qunetwork	Construction and visualization of co-expression network
qunetwork	Construction and visualization of co-expression network
showinfo	Show report of biclusters