Integrating Multi-Omic Network Data With Summay-Level GWAS Data
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Documentation for package ‘PanViz’ version 1.7.0
Help Pages
| adjl_to_G | adj_to_G |
| adjl_to_G_grouped | adjl_to_G_grouped |
| adj_list_to_igraph | adj_list_to_igraph |
| colour_IMON | colour network by categorical group levels |
| dbSNP_query_check | dbSNP_query_check |
| dbSNP_query_clean | dbSNP query clean up function |
| decompose_IMON | decompose_IMON |
| ego_IMON | ego_IMON |
| er_snp_vector | Summary-level GWAS data vector for estrogen-receptor positive breast cancer (EFO_1000649) |
| get_grouped_IMON | get IMON with SNP and or all network vertices coloured by group variables (either studies or phenotypes) |
| get_IMON | get_IMON |
| GWAS_data_reader | GWAS_data_reader |
| multi_hex_col_mix | multi_hex_col_mix |
| NCBI_clean | NCBI_clean |
| NCBI_clean_2 | NCBI_clean_2 |
| NCBI_dbSNP_query | NCBI_dbSNP_query |
| reaction_cleanup | reaction_cleanup |
| retry | Retry function |
| set_base_graph_attributes | set_base_graph_attributes |
| set_snp_grouping | snp grouping by chosen categorical variable |
| snp_gene_chr_match | snp_gene_chr_match |
| snp_gene_map | Fast vectorised SNP to gene chromosome number and genomic location mapping |