Predict gene network using an Ordinary Differential Equation (ODE) based method

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Documentation for package ‘NTW’ version 1.55.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

NTW-package	Gene interaction network and perturbation targets predictions
A.estimation.Srow	Estimation of a single row in matrix A with the perturbation targets matrix P known
AP.estimation.Srow	Estimation of a single row in gene interaction matrix A and perturbation targets matrix P
backward	Approaches to use a priori known gene association information for a single row estimation in matrix A
comb.matrix	Create all combinations of vectors
forward	Approaches to use a priori known gene association information for a single row estimation in matrix A
method.geo	Regression methods to estimate a single row in A with fixed perturbations
method.ml	Regression methods to estimate a single row in A with fixed perturbations
method.sse	Regression methods to estimate a single row in A with fixed perturbations
NTW	Estimation of gene interaction matrix A and perturbation targets matrix P
P.preestimation	Pre-estimation of the transcriptional pertubation targets matrix P
sos.data	SOS pathway perturbation data