NTW-package |
Gene interaction network and perturbation targets predictions |
A.estimation.Srow |
Estimation of a single row in matrix A with the perturbation targets matrix P known |
AP.estimation.Srow |
Estimation of a single row in gene interaction matrix A and perturbation targets matrix P |
backward |
Approaches to use a priori known gene association information for a single row estimation in matrix A |
comb.matrix |
Create all combinations of vectors |
forward |
Approaches to use a priori known gene association information for a single row estimation in matrix A |
method.geo |
Regression methods to estimate a single row in A with fixed perturbations |
method.ml |
Regression methods to estimate a single row in A with fixed perturbations |
method.sse |
Regression methods to estimate a single row in A with fixed perturbations |
NTW |
Estimation of gene interaction matrix A and perturbation targets matrix P |
P.preestimation |
Pre-estimation of the transcriptional pertubation targets matrix P |
sos.data |
SOS pathway perturbation data |