Multi Omic Master Regulator Analysis

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Documentation for package ‘MOMA’ version 1.18.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cnvScoreStouffer	Integrate CNV scores
example.gbm.mae	Glioblastoma (GBM) Example Dataset
gbm.pathways	Glioblastoma (GBM) Pathways
gene.map	Gene Location Mapping
makeSaturationPlots	Main function to generate the summary plots of the analysis
mapEntrez	Convert from entrez ids to hugo gene names
mapHugo	Convert from hugo gene names to entrez ids
mapScoresCnvBand	Map scores to cytoband location
Moma	MOMA Object
Moma-class	MOMA Object
MomaConstructor	MOMA Constructor Function
mutSig	MutSig Blacklisted genes
sampleNameFilter	Retain TCGA sample ids without the final letter designation ('A/B/C')
stoufferIntegrate	dispatch method for either CNV location corrected or SNV
stoufferIntegrateDiggit	Use Stouffer's method to combine z-scores of DIGGIT interactions for each cMR protein.