MODA: MOdule Differential Analysis for weighted gene co-expression network

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Documentation for package ‘MODA’ version 1.31.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

CompareAllNets	Illustration of network comparison
comparemodulestwonets	Illustration of two networks comparison
datExpr1	datExpr1
datExpr2	datExpr2
getPartition	Get numeric partition from folder
MIcondition	Modules detection by each condition
ModuleFrequency	Statistics of all conditions
modulesRank	Modules rank from recursive communities detection
NMImatrix	Illustration of network comparison by NMI
PartitionDensity	Illustration of partition density
PartitionModularity	Illustration of modularity density
recursiveigraph	Modules identification by recursive community detection
WeightedModulePartitionAmoutain	Modules detection by AMOUNTAIN algorithm
WeightedModulePartitionHierarchical	Modules detection by hierarchical clustering
WeightedModulePartitionLouvain	Modules detection by Louvain algorithm
WeightedModulePartitionSpectral	Modules detection by spectral clustering