Global test for groups of variables via model comparisons

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Documentation for package ‘GlobalAncova’ version 4.23.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bindata	Simulated binary data
colon.normal	Gene expression data
colon.pheno	Covariate information for the colon data
colon.tumour	Gene expression data
GABroad	Gene set testing of gene set databases using GlobalAncova
GAGO	Gene set testing of gene set databases using GlobalAncova
GAhier	Class '"GAhier"'
GAhier-class	Class '"GAhier"'
gGlobalAncova	Generalized GlobalAncova group test
gGlobalAncova.hierarchical	Hierarchical testing procedure using generalized GlobalAncova
GlobalAncova	Global test for differential gene expression
GlobalAncova-method	Global test for differential gene expression
GlobalAncova-methods	Methods for Function GlobalAncova
GlobalAncova.closed	Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed-method	Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed-methods	Methods for Function GlobalAncova.closed
GlobalAncova.decomp	GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates
pair.compare	Pairwise comparisons of factor levels within GlobalAncova
pathways	Cancer related pathways
phenodata	Covariate information for the van t'Veer data
Plot.all	Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic
Plot.features	Features Plot for generalized Global Ancova
Plot.genes	Genes Plot for Global Ancova
Plot.genes-method	Genes Plot for Global Ancova
Plot.genes-methods	Methods for Function Plot.genes
Plot.hierarchy	Class '"GAhier"'
Plot.hierarchy-method	Class '"GAhier"'
Plot.sequential	Visualization of sequential decomposition
Plot.subjects	Subjects Plot for GlobalAncova
Plot.subjects-method	Subjects Plot for GlobalAncova
Plot.subjects-methods	Methods for Function Plot.subjects
results	Class '"GAhier"'
results-method	Class '"GAhier"'
show-method	Class '"GAhier"'
sigEndnodes	Class '"GAhier"'
sigEndnodes-method	Class '"GAhier"'
vantVeer	Gene expression data