Pedigree and genetic relationship functions

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Documentation for package ‘GeneticsPed’ version 1.67.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.character.Pedigree	Pedigree
as.factor.Pedigree	Pedigree
as.integer.Pedigree	Pedigree
as.Pedigree	Pedigree
as.Pedigree.data.frame	Pedigree
as.Pedigree.matrix	Pedigree
as.Pedigree.Pedigree	Pedigree
check	Check consistency of data in pedigree
check.Pedigree	Check consistency of data in pedigree
checkId	Check consistency of data in pedigree
extend	Extend pedigree
Falconer	Pedigree and data examples
Falconer5.1	Pedigree and data examples
family	Find families (lines) in the pedigree
family<-	Find families (lines) in the pedigree
gameteFlowM	Gene and gamete flow matrices
geneContribution	Gene contribution or proportion of genes in pedigree by individual
geneFlowT	Gene and gamete flow matrices
geneFlowTinv	Gene and gamete flow matrices
generatePedigree	Generate Pedigree example
generation	Calculate generation value
generation<-	Calculate generation value
gpi	Genotype probability index
gpLong2Wide	Utility functions for gpi()
hwp	Utility functions for gpi()
inbreeding	Inbreeding coefficient
inverseAdditive	Additive relationship matrix and its inverse
is.Pedigree	Pedigree
isFounder	Founder and non-founder individuals in the pedigree
kinship	Additive relationship matrix and its inverse
mendelianSamplingD	Gene and gamete flow matrices
model.matrix.Pedigree	Model matrix for individuals with and without records
Mrode	Pedigree and data examples
Mrode2.1	Pedigree and data examples
Mrode3.1	Pedigree and data examples
nIndividual	Number of individuals in a pedigree
Pedigree	Pedigree
prune	Prune pedigree
relationshipAdditive	Additive relationship matrix and its inverse
removeIndividual	Remove individual from pedigree
sort.Pedigree	Sort pedigree
summary.Pedigree	Pedigree summary
undocumented	Undocumented functions