CDR3ab | Mock data set of complementarity determining region 3 (CDR3) sequences from the alpha and beta chains of 10,000 T cell receptors |
class:clust_irr | clust_irr class |
cluster_irr | Clustering of immune receptor repertoires (IRRs) |
clust_irr | clust_irr class |
clust_irr-class | clust_irr class |
dco | Model-based differential community occupancy (DCO) analysis |
detect_communities | Graph-based community detection (GCD) |
get_clustirr_clust | clust_irr class |
get_clustirr_clust-method | clust_irr class |
get_clustirr_inputs | clust_irr class |
get_clustirr_inputs-method | clust_irr class |
get_graph | Get 'igraph' object from 'clust_irr' object |
get_joint_graph | Create joint 'igraph' object from multiple 'clust_irr' objects |
mcpas | CDR3 sequences and their matching epitopes obtained from McPAS-TCR |
plot_graph | Plot ClustIRR graph |
tcr3d | CDR3 sequences and their matching epitopes obtained from TCR3d |
vdjdb | CDR3 sequences and their matching epitopes obtained from VDJdb |