Clustering of immune receptor repertoires
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Documentation for package ‘ClustIRR’ version 1.4.0
Help Pages
| CDR3ab | Mock data set of complementarity determining region 3 (CDR3) sequences from the alpha and beta chains of 10,000 T cell receptors |
| class:clust_irr | clust_irr class |
| cluster_irr | Clustering of immune receptor repertoires (IRRs) |
| clust_irr | clust_irr class |
| clust_irr-class | clust_irr class |
| dco | Model-based differential community occupancy (DCO) analysis |
| detect_communities | Graph-based community detection (GCD) |
| get_clustirr_clust | clust_irr class |
| get_clustirr_clust-method | clust_irr class |
| get_clustirr_inputs | clust_irr class |
| get_clustirr_inputs-method | clust_irr class |
| get_graph | Get 'igraph' object from 'clust_irr' object |
| get_joint_graph | Create joint 'igraph' object from multiple 'clust_irr' objects |
| mcpas | CDR3 sequences and their matching epitopes obtained from McPAS-TCR |
| plot_graph | Plot ClustIRR graph |
| tcr3d | CDR3 sequences and their matching epitopes obtained from TCR3d |
| vdjdb | CDR3 sequences and their matching epitopes obtained from VDJdb |