Explores Cancer Testis Genes

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Documentation for package ‘CTexploreR’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

all_genes	All genes description table
CCLE_expression	Gene expression in CCLE Tumors
check_names	Check spelling of entered variables
CT_correlated_genes	Gene correlations in CCLE cancer cell lines
CT_genes	CT genes description table
DAC_induction	Gene expression in cells treated or not by a demethylating agent
embryos_mean_methylation	Promoter methylation of any gene in early embryos
embryo_expression	Gene expression in human embryos
fetal_germcells_expression	Gene expression in fetal germ cells
fetal_germcells_mean_methylation	Promoter methylation of any gene in fetal germ cells
GTEX_expression	Gene expression in normal tissues (GTEx)
hESC_expression	Gene expression in human embryonic stem cells
hESC_mean_methylation	Promoter methylation of any gene in hESC
HPA_cell_type_expression	Gene expression in different human cell types
normal_tissues_mean_methylation	Promoter methylation of any gene in normal tissues
normal_tissues_methylation	Methylation of CpGs located in promoters in normal tissues
normal_tissue_expression_multimapping	Expression values (TPM) of genes in normal tissues with or without multimapping
oocytes_expression	Gene expression in oocytes
prepare_TCGA_methylation_expression	Prepare methylation and expression data of a gene in TCGA tumors
set_fontsize	Determine font size
subset_database	Subset databases
TCGA_expression	Gene expression in TCGA tumors
TCGA_methylation_expression_correlation	Methylation-Expression correlation of any genes in TCGA samples
testis_expression	Gene expression in testis cells