Explores Cancer Testis Genes


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Documentation for package ‘CTexploreR’ version 1.2.0

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all_genes All genes description table
CCLE_expression Gene expression in CCLE Tumors
check_names Check spelling of entered variables
CT_correlated_genes Gene correlations in CCLE cancer cell lines
CT_genes CT genes description table
DAC_induction Gene expression in cells treated or not by a demethylating agent
embryos_mean_methylation Promoter methylation of any gene in early embryos
embryo_expression Gene expression in human embryos
fetal_germcells_expression Gene expression in fetal germ cells
fetal_germcells_mean_methylation Promoter methylation of any gene in fetal germ cells
GTEX_expression Gene expression in normal tissues (GTEx)
hESC_expression Gene expression in human embryonic stem cells
hESC_mean_methylation Promoter methylation of any gene in hESC
HPA_cell_type_expression Gene expression in different human cell types
normal_tissues_mean_methylation Promoter methylation of any gene in normal tissues
normal_tissues_methylation Methylation of CpGs located in promoters in normal tissues
normal_tissue_expression_multimapping Expression values (TPM) of genes in normal tissues with or without multimapping
oocytes_expression Gene expression in oocytes
prepare_TCGA_methylation_expression Prepare methylation and expression data of a gene in TCGA tumors
set_fontsize Determine font size
subset_database Subset databases
TCGA_expression Gene expression in TCGA tumors
TCGA_methylation_expression_correlation Methylation-Expression correlation of any genes in TCGA samples
testis_expression Gene expression in testis cells