Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

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Documentation for package ‘CRISPRball’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

build_depmap_db	Build SQLite database of DepMap data
CRISPRball	Create an interactive Shiny app for visualization & exploration of CRISPR analyses
depmap_22q1_cn	DepMap copy number data
depmap_22q1_crispr	DepMap CRISPR screen data
depmap_22q1_crispr_rnai	DepMap CRISPR & RNAi screen data
depmap_22q1_rnai	DepMap RNAi screen data
depmap_22q1_TPM	DepMap expression data
gene_ingress	Parse gene summary data for easier plotting and display
get_depmap_essentiality	Get essential/selective gene information from DepMap summary table.
get_depmap_plot_data	Create DepMap dataframe for plotting
plot_bar	Create interactive bar plot
plot_correlation_heatmap	Plot a Correlation Heatmap
plot_depmap_cn	Plot gene copy number information from DepMap
plot_depmap_dependency	Plot gene dependency information from DepMap CRISPR and RNAi tables
plot_depmap_expression	Plot gene expression information from DepMap, mostly from CCLE
plot_depmap_lineages	Plot selected information across lineages from DepMap.
plot_hist	Create a plotly plot from a distribution of values
plot_lawn	Create an interactive lawn plot
plot_pca_biplot	Plot a biplot from a PCAtools 'pca' object
plot_rank	Create an interactive rank plot
plot_volcano	Create an interactive volcano plot
read_mle_gene_summary	Read and parse MAGeCK MLE output gene summary file