Agreement of Differential Expression Analysis


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Documentation for package ‘AGDEX’ version 1.53.0

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AGDEX-package Agreement of differential expression analysis
agdex Agreement of Differential Expression Analysis
agdex.res Saved result returned by agdex()
agdex.scatterplot scatter plot of AGDEX result
get.gset.result.details Extract gene-level details from gene-set results
gset.data a sample gene-set data
human.data Sample ExpressionSet object of human data
make.dex.set.object Make a list object for function agdex()
map.data Probe-set Mapping Data
mouse.data Mouse Data
read.agdex.gset.details read detailed results of gene-set analyses
read.agdex.result Read the output file of agdex analysis
write.agdex.gset.details write the output of get.gset.result.details to a tab-delimited text file.
write.agdex.result Write the AGDEX results to output file