GWAS trait-associated SNP enrichment analyses in genomic intervals

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Documentation for package ‘traseR’ version 1.36.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

traseR-package	GWAS trait-associated SNP enrichment analyses in genomic intervals
CEU	Sampled SNPs from all SNPs of CEU population in 1000 genome project
plotContext	Visualize of trait-associated SNPs
plotGene	Visualize of trait-associated SNPs
plotInterval	Visualize of trait-associated SNPs
plotPvalue	Visualize of trait-associated SNPs
plotSNP	Visualize of trait-associated SNPs
print.traseR	Print the outcome of taSNP enrichment analyses
queryGene	Retrieve trait-associated SNPs based
queryKeyword	Retrieve trait-associated SNPs based
querySNP	Retrieve trait-associated SNPs based
taSNP	trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser
taSNPLD	linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI
Tcell	Peak regions of H3K4me1 in Peripheral blood T cell
traseR	TRait-Associated SNP EnRichment analyses