Transcriptome Analysis of Differential Allelic Representation
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Documentation for package ‘tadar’ version 1.4.0
Help Pages
| assignFeatureDar | Assign DAR values to genomic features |
| assignFeatureDar-method | Assign DAR values to genomic features |
| chr1_genes | Genomic feature example data |
| chr1_tt | Differential expression example data |
| countAlleles | Count alleles within each experimental group |
| countAlleles-method | Count alleles within each experimental group |
| countsToProps | Convert allele counts to proportions |
| countsToProps-method | Convert allele counts to proportions |
| dar | Calculate Differential Allelic Representation (DAR) |
| dar-method | Calculate Differential Allelic Representation (DAR) |
| filterLoci | Filter loci |
| filterLoci-method | Filter loci |
| flipRanges | Convert DAR origin ranges to DAR region ranges, or vice versa |
| flipRanges-method | Convert DAR origin ranges to DAR region ranges, or vice versa |
| modP | DAR-moderated _p_-values |
| modP-method | DAR-moderated _p_-values |
| plotChrDar | Plot DAR across a chromosome |
| plotChrDar-method | Plot DAR across a chromosome |
| plotDarECDF | Plot the Empirical Cumulative Distribution Function of DAR |
| plotDarECDF-method | Plot the Empirical Cumulative Distribution Function of DAR |
| readGenotypes | Read genotypes from a VCF file |
| readGenotypes-method | Read genotypes from a VCF file |
| unphaseGT | Unphase genotypes |
| unphaseGT-method | Unphase genotypes |