structToolbox-package	structToolbox-package
ANOVA	ANOVA
as_data_frame	as_data_frame
as_data_frame,filter_na_count-method	as_data_frame
as_data_frame,ttest-method	as_data_frame
as_data_frame,wilcox_test-method	as_data_frame
AUC	AUC
autoscale	autoscale
balanced_accuracy	balanced_accuracy
blank_filter	blank_filter
blank_filter_hist	blank_filter_hist
bootstrap	bootstrap
calculate	calculate
calculate,AUC-method	calculate
calculate,balanced_accuracy-method	calculate
calculate,r_squared-method	calculate
chart_plot	chart_plot
chart_plot,blank_filter_hist,blank_filter-method	chart_plot
chart_plot,compare_dist,DatasetExperiment-method	chart_plot
chart_plot,confounders_lsq_barchart,confounders_clsq-method	chart_plot
chart_plot,confounders_lsq_boxplot,confounders_clsq-method	chart_plot
chart_plot,DatasetExperiment_boxplot,DatasetExperiment-method	chart_plot
chart_plot,DatasetExperiment_dist,DatasetExperiment-method	chart_plot
chart_plot,DatasetExperiment_factor_boxplot,DatasetExperiment-method	chart_plot
chart_plot,DatasetExperiment_heatmap,DatasetExperiment-method	chart_plot
chart_plot,dfa_scores_plot,DFA-method	chart_plot
chart_plot,feature_boxplot,DatasetExperiment-method	chart_plot
chart_plot,feature_profile,DatasetExperiment-method	chart_plot
chart_plot,feature_profile,sb_corr-method	chart_plot
chart_plot,feature_profile_array,DatasetExperiment-method	chart_plot
chart_plot,fold_change_plot,fold_change-method	chart_plot
chart_plot,fs_line,forward_selection_by_rank-method	chart_plot
chart_plot,glog_opt_plot,glog_transform-method	chart_plot
chart_plot,gs_line,grid_search_1d-method	chart_plot
chart_plot,hca_dendrogram,HCA-method	chart_plot
chart_plot,kfoldxcv_grid,kfold_xval-method	chart_plot
chart_plot,kfoldxcv_metric,kfold_xval-method	chart_plot
chart_plot,kw_p_hist,kw_rank_sum-method	chart_plot
chart_plot,mv_boxplot,DatasetExperiment-method	chart_plot
chart_plot,mv_feature_filter_hist,mv_feature_filter-method	chart_plot
chart_plot,mv_histogram,DatasetExperiment-method	chart_plot
chart_plot,mv_sample_filter_hist,mv_sample_filter-method	chart_plot
chart_plot,pca_biplot,PCA-method	chart_plot
chart_plot,pca_correlation_plot,PCA-method	chart_plot
chart_plot,pca_dstat_plot,PCA-method	chart_plot
chart_plot,pca_loadings_plot,PCA-method	chart_plot
chart_plot,pca_scores_plot,PCA-method	chart_plot
chart_plot,pca_scree_plot,PCA-method	chart_plot
chart_plot,permutation_test_plot,permutation_test-method	chart_plot
chart_plot,plsda_feature_importance_plot,PLSDA-method	chart_plot
chart_plot,plsda_predicted_plot,PLSDA-method	chart_plot
chart_plot,plsda_roc_plot,PLSDA-method	chart_plot
chart_plot,plsr_cook_dist,PLSR-method	chart_plot
chart_plot,plsr_prediction_plot,PLSR-method	chart_plot
chart_plot,plsr_qq_plot,PLSR-method	chart_plot
chart_plot,plsr_residual_hist,PLSR-method	chart_plot
chart_plot,pls_regcoeff_plot,PLSR-method	chart_plot
chart_plot,pls_scores_plot,PLSR-method	chart_plot
chart_plot,pls_vip_plot,PLSR-method	chart_plot
chart_plot,pqn_norm_hist,pqn_norm-method	chart_plot
chart_plot,resample_chart,resample-method	chart_plot
chart_plot,rsd_filter_hist,rsd_filter-method	chart_plot
chart_plot,scatter_chart,DatasetExperiment-method	chart_plot
chart_plot,svm_plot_2d,SVM-method	chart_plot
chart_plot,tic_chart,DatasetExperiment-method	chart_plot
chart_plot,tSNE_scatter,tSNE-method	chart_plot
chart_plot,wilcox_p_hist,wilcox_test-method	chart_plot
classical_lsq	classical_lsq
compare_dist	compare_dist
confounders_clsq	confounders_clsq
confounders_lsq_barchart	confounders_lsq_barchart
confounders_lsq_boxplot	confounders_lsq_boxplot
constant_sum_norm	constant_sum_norm
corr_coef	corr_coef
DatasetExperiment_boxplot	DatasetExperiment_boxplot
DatasetExperiment_dist	DatasetExperiment_dist
DatasetExperiment_factor_boxplot	DatasetExperiment_factor_boxplot
DatasetExperiment_heatmap	DatasetExperiment_heatmap
DFA	DFA
dfa_scores_plot	dfa_scores_plot
dratio_filter	dratio_filter
equal_split	equal_split
feature_boxplot	feature_boxplot
feature_profile	feature_profile
feature_profile_array	feature_profile_array
filter_by_name	filter_by_name
filter_na_count	filter_na_count
filter_smeta	filter_smeta
fisher_exact	fisher_exact
fold_change	fold_change
fold_change_int	fold_change_int
fold_change_plot	fold_change_plot
forward_selection_by_rank	forward_selection_by_rank
fs_line	fs_line
glog_opt_plot	glog_opt_plot
glog_transform	glog_transform
grid_search_1d	grid_search_1d
gs_line	gs_line
HCA	HCA
hca_dendrogram	hca_dendrogram
HSD	HSD
HSDEM	HSDEM
kfoldxcv_grid	kfoldxcv_grid
kfoldxcv_metric	kfoldxcv_metric
kfold_xval	kfold_xval
knn_impute	knn_impute
kw_p_hist	kw_p_hist
kw_rank_sum	kw_rank_sum
linear_model	linear_model
log_transform	log_transform
mean_centre	mean_centre
mean_of_medians	mean_of_medians
mixed_effect	mixed_effect
model_apply	model_apply
model_apply,ANOVA,DatasetExperiment-method	model_apply
model_apply,classical_lsq,DatasetExperiment-method	model_apply
model_apply,confounders_clsq,DatasetExperiment-method	model_apply
model_apply,constant_sum_norm,DatasetExperiment-method	model_apply
model_apply,corr_coef,DatasetExperiment-method	model_apply
model_apply,equal_split,DatasetExperiment-method	model_apply
model_apply,filter_smeta,DatasetExperiment-method	model_apply
model_apply,fisher_exact,DatasetExperiment-method	model_apply
model_apply,fold_change,DatasetExperiment-method	model_apply
model_apply,fold_change_int,DatasetExperiment-method	model_apply
model_apply,HCA,DatasetExperiment-method	model_apply
model_apply,HSD,DatasetExperiment-method	model_apply
model_apply,HSDEM,DatasetExperiment-method	model_apply
model_apply,knn_impute,DatasetExperiment-method	model_apply
model_apply,kw_rank_sum,DatasetExperiment-method	model_apply
model_apply,log_transform,DatasetExperiment-method	model_apply
model_apply,mean_of_medians,DatasetExperiment-method	model_apply
model_apply,mixed_effect,DatasetExperiment-method	model_apply
model_apply,nroot_transform,DatasetExperiment-method	model_apply
model_apply,pairs_filter,DatasetExperiment-method	model_apply
model_apply,prop_na,DatasetExperiment-method	model_apply
model_apply,rsd_filter,DatasetExperiment-method	model_apply
model_apply,sb_corr,DatasetExperiment-method	model_apply
model_apply,split_data,DatasetExperiment-method	model_apply
model_apply,stratified_split,DatasetExperiment-method	model_apply
model_apply,tSNE,DatasetExperiment-method	model_apply
model_apply,ttest,DatasetExperiment-method	model_apply
model_apply,vec_norm,DatasetExperiment-method	model_apply
model_apply,wilcox_test,DatasetExperiment-method	model_apply
model_predict	model_predict
model_predict,autoscale,DatasetExperiment-method	model_predict
model_predict,blank_filter,DatasetExperiment-method	model_predict
model_predict,constant_sum_norm,DatasetExperiment-method	model_predict
model_predict,DFA,DatasetExperiment-method	model_predict
model_predict,dratio_filter,DatasetExperiment-method	model_predict
model_predict,filter_by_name,DatasetExperiment-method	model_predict
model_predict,filter_na_count,DatasetExperiment-method	model_predict
model_predict,filter_smeta,DatasetExperiment-method	model_predict
model_predict,glog_transform,DatasetExperiment-method	model_predict
model_predict,linear_model,DatasetExperiment-method	model_predict
model_predict,mean_centre,DatasetExperiment-method	model_predict
model_predict,mv_feature_filter,DatasetExperiment-method	model_predict
model_predict,mv_sample_filter,DatasetExperiment-method	model_predict
model_predict,OPLSDA,DatasetExperiment-method	model_predict
model_predict,OPLSR,DatasetExperiment-method	model_predict
model_predict,pareto_scale,DatasetExperiment-method	model_predict
model_predict,PCA,DatasetExperiment-method	model_predict
model_predict,PLSDA,DatasetExperiment-method	model_predict
model_predict,PLSR,DatasetExperiment-method	model_predict
model_predict,pqn_norm,DatasetExperiment-method	model_predict
model_predict,SVM,DatasetExperiment-method	model_predict
model_predict,vec_norm,DatasetExperiment-method	model_predict
model_reverse	model_reverse
model_reverse,autoscale,DatasetExperiment-method	model_reverse
model_reverse,mean_centre,DatasetExperiment-method	model_reverse
model_train	model_train
model_train,autoscale,DatasetExperiment-method	model_train
model_train,blank_filter,DatasetExperiment-method	model_train
model_train,constant_sum_norm,DatasetExperiment-method	model_train
model_train,DFA,DatasetExperiment-method	model_train
model_train,dratio_filter,DatasetExperiment-method	model_train
model_train,filter_by_name,DatasetExperiment-method	model_train
model_train,filter_na_count,DatasetExperiment-method	model_train
model_train,filter_smeta,DatasetExperiment-method	model_train
model_train,glog_transform,DatasetExperiment-method	model_train
model_train,linear_model,DatasetExperiment-method	model_train
model_train,mean_centre,DatasetExperiment-method	model_train
model_train,mv_feature_filter,DatasetExperiment-method	model_train
model_train,mv_sample_filter,DatasetExperiment-method	model_train
model_train,OPLSDA,DatasetExperiment-method	model_train
model_train,OPLSR,DatasetExperiment-method	model_train
model_train,pareto_scale,DatasetExperiment-method	model_train
model_train,PCA,DatasetExperiment-method	model_train
model_train,PLSDA,DatasetExperiment-method	model_train
model_train,PLSR,DatasetExperiment-method	model_train
model_train,pqn_norm,DatasetExperiment-method	model_train
model_train,SVM,DatasetExperiment-method	model_train
model_train,vec_norm,DatasetExperiment-method	model_train
MTBLS79_DatasetExperiment	MTBLS79_DatasetExperiment
mv_boxplot	mv_boxplot
mv_feature_filter	mv_feature_filter
mv_feature_filter_hist	mv_feature_filter_hist
mv_histogram	mv_histogram
mv_sample_filter	mv_sample_filter
mv_sample_filter_hist	mv_sample_filter_hist
nroot_transform	nroot_transform
ontology_cache	ontology_cache
OPLSDA	OPLSDA
OPLSR	OPLSR
pairs_filter	pairs_filter
pareto_scale	pareto_scale
PCA	PCA
pca_biplot	pca_biplot
pca_correlation_plot	pca_correlation_plot
pca_dstat_plot	pca_dstat_plot
pca_loadings_plot	pca_loadings_plot
pca_scores_plot	pca_scores_plot
pca_scree_plot	pca_scree_plot
permutation_test	permutation_test
permutation_test_plot	permutation_test_plot
permute_sample_order	permute_sample_order
PLSDA	PLSDA
plsda_feature_importance_plot	plsda_feature_importance_plot
plsda_predicted_plot	plsda_predicted_plot
plsda_roc_plot	plsda_roc_plot
plsda_scores_plot	pls_scores_plot
PLSR	PLSR
plsr_cook_dist	plsr_cook_dist
plsr_prediction_plot	plsr_prediction_plot
plsr_qq_plot	plsr_qq_plot
plsr_residual_hist	plsr_residual_hist
pls_regcoeff_plot	pls_regcoeff_plot
pls_scores_plot	pls_scores_plot
pls_scores_plot,	pls_scores_plot
pls_vip_plot	pls_vip_plot
pqn_norm	pqn_norm
pqn_norm_hist	pqn_norm_hist
prop_na	prop_na
resample	resample
resample_chart	resample_chart
rsd_filter	rsd_filter
rsd_filter_hist	rsd_filter_hist
run	run
run,bootstrap,DatasetExperiment,metric-method	run
run,forward_selection_by_rank,DatasetExperiment,metric-method	run
run,grid_search_1d,DatasetExperiment,metric-method	run
run,kfold_xval,DatasetExperiment,metric-method	run
run,permutation_test,DatasetExperiment,metric-method	run
run,permute_sample_order,DatasetExperiment,metric-method	run
run,resample,DatasetExperiment,metric-method	run
r_squared	r_squared
sb_corr	sb_corr
scatter_chart	scatter_chart
split_data	split_data
stratified_split	stratified_split
structToolbox	structToolbox-package
SVM	SVM
svm_plot_2d	svm_plot_2d
tic_chart	tic_chart
tSNE	tSNE
tSNE_scatter	tSNE_scatter
ttest	ttest
vec_norm	vec_norm
wilcox_p_hist	wilcox_p_hist
wilcox_test	wilcox_test
