stJoincount - Join count statistic for quantifying spatial
correlation between clusters
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Documentation for package ‘stJoincount’ version 1.7.0
Help Pages
| customDict | Generate dict of cluster names |
| dataPrepFromSeurat | Data Preparation from Seurat Object |
| dataPrepFromSpE | Data Preparation from SpatialExperiment Object |
| extentBuffer | Find optimal number of buffer for extent |
| joincountAnalysis | Join count analysis |
| mosaicIntPlot | Mosaic plot |
| rasterizeEachCluster | Create a raster object from a labeled sample |
| rasterPrep | Raster layer preparation |
| resolutionCalc | Resolution calculation |
| zscoreMatrix | Generate Z-score matrix |
| zscorePlot | Visulization of Z-score heatmap. |