a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data

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Documentation for package ‘seq2pathway’ version 1.37.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addDescription	Retrieve "gene description" attributes for gene symbol.
Chipseq_Peak_demo	chip seq loci data example
dat_chip	chip seq data example
dat_RNA	RNA sequence data example
FisherTest_GO_BP_MF_CC	A wrapper function to perform the Fisher's exact test, using GO-defined genesets.
FisherTest_MsigDB	A wrapper function to perform conditional Fisher's exact test, using custom-defined genesets.
gene2pathway_test	A wrapper function to perform gene2pathway test.
GRanges_demo	loci information with GRanges format
plotTop10	A wrapper function to plot top10 test results.
runseq2gene	R wrapped python function to map genomic regions on the sequence-level to genes.
runseq2pathway	An function to perform the runseq2pathway algorithm(s).