boxplotPCA | Plot Principal Components for Different Cell Types |
calculateCategorizationEntropy | Calculate Categorization Entropy |
calculateCellDistancesSimilarity | Function to Calculate Bhattacharyya Coefficients and Hellinger Distances |
calculateCramerPValue | Calculate Cramer Test P-Values for Two-Sample Comparison of Multivariate ECDFs |
calculateHotellingPValue | Perform Hotelling's T-squared Test on PCA Scores for Single-cell RNA-seq Data |
calculateHVGOverlap | Calculate the Overlap Coefficient for Highly Variable Genes |
calculateVarImpOverlap | Compare Gene Importance Across Datasets Using Random Forest |
calculateWassersteinDistance | Compute Wasserstein Distances Between Query and Reference Datasets |
histQCvsAnnotation | Histograms: QC Stats and Annotation Scores Visualization |
plotCellTypeMDS | Plot Reference and Query Cell Types using MDS |
plotCellTypePCA | Plot Principal Components for Different Cell Types |
plotGeneExpressionDimred | Visualize gene expression on a dimensional reduction plot |
plotGeneSetScores | Visualization of gene sets or pathway scores on dimensional reduction plot |
plotMarkerExpression | Plot gene expression distribution from overall and cell type-specific perspective |
plotPairwiseDistancesDensity | Ridgeline Plot of Pairwise Distance Analysis |
plotQCvsAnnotation | Scatter plot: QC stats vs Cell Type Annotation Scores |
projectPCA | Project Query Data Onto PCA Space of Reference Data |
projectSIR | Project Query Data Onto SIR Space of Reference Data |