rqt: utilities for gene-level meta-analysis

---

Documentation for package ‘rqt’ version 1.32.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

build.null.model	Applies linear of logistic regregression to the data.
covariates	This function performs an access to covariates
covariates-method	This function performs an access to covariates
geneTest	This function performs a gene-level test based on combined effect sizes.
geneTest-method	This function performs a gene-level test based on combined effect sizes.
geneTestMeta	This function performs a gene-level meta-analysis based on combined effect sizes.
geneTestMeta-method	This function performs a gene-level meta-analysis based on combined effect sizes.
geneTestOne	get.reg.family
genotype	This function performs an access to genotype.
genotype-method	This function performs an access to genotype.
get.a	Get a given STT
get.reg.family	get.reg.family
phenotype	This function performs an access to phenotype
phenotype-method	This function performs an access to phenotype
preprocess	Preprocess input data with Principal Component Analysis method (PCA)
preprocessLASSO	preprocessLASSO
preprocessPCA	preprocessPCA
preprocessPLS	preprocessPLS
preprocessRidge	preprocessLASSO
print.rqt	General functions of 'rqt' such as accessors and printing.
results	This function performs an access to covariates
results-method	This function performs an access to covariates
ridge_se	Importing required packages and functions
rqt	The rqt class constructor
rqt-class	The rqt class
rqt-general	General functions of 'rqt' such as accessors and printing.
show.rqt	General functions of 'rqt' such as accessors and printing.
simple.multvar.reg	Applies linear of logistic regregression to the data.
summary.rqt	General functions of 'rqt' such as accessors and printing.
vcov_ridge	vcov_ridge: returns variance-covariance matrix and standard deviation for ridge/LASSO regression object