Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

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Documentation for package ‘rawDiag’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.calculatioMasterScan	Calculate Master Scan Number
.cycleTime	Calculate MS Cycle Time
.fillNAgaps	Fill NA values with last previous value
buildRawDiagShinyApp	Build the rawDiag shiny application
checkRawrr	Checks Bioconductor installation instructions
is.rawDiag	Is an Object an rawDiag Object?
PlotChargeState	Charge State Overview Plot
plotChargeState	Charge State Overview Plot
PlotCycleLoad	Cycle Load Plot
plotCycleLoad	Cycle Load Plot
PlotCycleTime	Plot Cycle Time
plotCycleTime	Plot Cycle Time
PlotInjectionTime	Plot Injection Time
plotInjectionTime	Plot Injection Time
PlotLockMassCorrection	Lock Mass Correction Plot
plotLockMassCorrection	Lock Mass Correction Plot
PlotMassDistribution	Mass Distribution Plot
plotMassDistribution	Mass Distribution Plot
PlotMzDistribution	mZ Distribution Plot of Ms2 Scans
plotMzDistribution	mZ Distribution Plot of Ms2 Scans
PlotPrecursorHeatmap	Precursor Mass versus StartTime MS2 based hexagons
plotPrecursorHeatmap	Precursor Mass versus StartTime MS2 based hexagons
PlotScanTime	Scan Event Plot
plotScanTime	Scan Event Plot
PlotTicBasepeak	Total Ion Count and Base Peak Plot
plotTicBasepeak	Total Ion Count and Base Peak Plot
rawDiag	Reads selected raw file trailer information for rawDiag plot functions
rawDiagServer	rawDiag shiny module
rawDiagUI	rawDiag shiny module UI
readRaw	Reads selected raw file trailer information for rawDiag plot functions