Pathway RespOnsive GENes for activity inference from gene expression

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Documentation for package ‘progeny’ version 1.28.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

getModel	Returns the Progeny Model
model_human_full	The full human linear model underlying PROGENy
model_mouse_full	The full mouse linear model underlying PROGENy
progeny	Calculate PROGENy pathway scores from gene expression
progenyPerm	Compute progeny pathway scores and assesses significance based on permutations
progenyScatter	Calculate Progeny Scores with Permutations
saveProgenyPlots	Function to save Progeny plots
vignette_data	The RNA data used in the progeny vignette