R wrapper for Progenetix

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Documentation for package ‘pgxRpi’ version 1.1.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

hg19_cytoband	A dataframe containing cytoband annotation details extracted from the hg19 gennome. It is used for CNV frequency visualization.
hg38_cytoband	A dataframe containing cytoband annotation details extracted from the hg38 gennome. It is used for CNV frequency visualization.
pgxFilter	Query available filters
pgxFreqplot	Plot CNV frequency data
pgxLoader	Load data from Progenetix database via the Beacon v2 API with some extensions
pgxMetaplot	Plot survival data of individuals
pgxSegprocess	Extract, analyse and visualize "pgxseg" files
segtoFreq	Calculate CNV frequency data from given segment data