Generation of null ranges via bootstrapping or covariate
matching
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Documentation for package ‘nullranges’ version 1.12.0
Help Pages
| BootRanges | BootRanges object |
| bootRanges | Block bootstrap for genomic ranges |
| BootRanges-class | BootRanges object |
| combnCov | Function for creating combinations of covariates |
| combnCov-method | Function for creating combinations of covariates |
| covariates | Get covariates from a Matched object |
| covariates-method | Get covariates from a Matched object |
| focal | Get focal set from a Matched object |
| focal-method | Get focal set from a Matched object |
| indices | Get indices of matched set |
| indices-method | Get indices of matched set |
| makeExampleMatchedDataSet | Function for generating an example matchRanges or Matched dataset |
| makeExampleMatchedDataSet-method | Function for generating an example matchRanges or Matched dataset |
| Matched | Matched objects |
| matched | Get matched set from a Matched object |
| Matched-class | Matched objects |
| matched-method | Get matched set from a Matched object |
| matchedData | Get matched data from a Matched object |
| matchedData-method | Get matched data from a Matched object |
| MatchedDataFrame | MatchedDataFrame objects |
| MatchedDataFrame-class | MatchedDataFrame objects |
| MatchedGInteractions | MatchedGInteractions objects |
| MatchedGInteractions-class | MatchedGInteractions objects |
| MatchedGRanges | MatchedGRanges objects |
| MatchedGRanges-class | MatchedGRanges objects |
| matchRanges | Generate a covariate-matched control set of ranges |
| matchRanges-method | Generate a covariate-matched control set of ranges |
| method | Get matching method used for Matched object |
| method-method | Get matching method used for Matched object |
| oneRegionSegment | Segmentation based on one region |
| overview | Overview of matching quality |
| overview-method | Overview of matching quality |
| plotCovariate | Covariate plotting for Matched objects |
| plotCovariate-method | Covariate plotting for Matched objects |
| plotPropensity | Propensity score plotting for Matched objects |
| plotPropensity-method | Propensity score plotting for Matched objects |
| plotSegment | Plot genome segmentation |
| pool | Get pool set from a Matched object |
| pool-method | Get pool set from a Matched object |
| reduceSegment | Combine nearby regions with same state |
| segmentDensity | Genome segmentation based on feature density |
| unmatched | Get unmatched set from a Matched object |
| unmatched-method | Get unmatched set from a Matched object |
| withReplacement | Get replace method |
| withReplacement-method | Get replace method |