Functional analysis of metabolic and transcriptomic data

---

Documentation for package ‘famat’ version 1.15.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

compl_data	Data preparation for Shiny interface
compl_data_result	Output of 'compl_data' function
consensusPath	The variables in the environment variable 'MPINetData' of the system
genes	List of genes.
getBackground	The variables in the environment variable 'MPINetData' of the system
getnodeseq	The variables in the environment variable 'MPINetData' of the system
getpathList('KEGG')	The variables in the environment variable 'MPINetData' of the system
getStr	The variables in the environment variable 'MPINetData' of the system
interactions	Interactions between genes and metabolites
interactions_result	Output of 'interactions' function
listk	Pathway enrichment analysis results for KEGG pathways.
listr	Pathway enrichment analysis results for Reactome pathways.
listw	Pathway enrichment analysis results for Wikipathways pathways.
meta	List of metabolites.
MPINetData	The variables in the environment variable 'MPINetData' of the system
path_enrich	Pathway enrichment analysis
rshiny	Shiny interface