Easy single cell analysis platform for enrichment

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Documentation for package ‘escape’ version 2.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

densityEnrichment	Visualize the mean density ranking of genes across gene set
escape.gene.sets	Built-In Gene Sets for escape
escape.matrix	Calculate gene set enrichment scores
getGeneSets	Get a collection of gene sets to perform enrichment on
geyserEnrichment	Generate a ridge plot to examine enrichment distributions
heatmapEnrichment	Generate a heatmap to visualize enrichment values
pcaEnrichment	Visualize the PCA of enrichment values
performNormalization	Perform Normalization on Enrichment Data
performPCA	Perform Principal Component Analysis on Enrichment Data
ridgeEnrichment	Visualize enrichment results with a ridge plot
runEscape	Enrichment calculation for single-cell workflows
scatterEnrichment	Generate a density-based scatter plot
splitEnrichment	Visualize enrichment results with a split violin plot