Divergence: Functionality for assessing omics data by divergence
with respect to a baseline
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Documentation for package ‘divergence’ version 1.21.0
Help Pages
| breastTCGA_ER | ER positive or negative status of breast tumor samples |
| breastTCGA_Group | Normal or Tumor status of breast samples |
| breastTCGA_Mat | Gene expression for 260 genes in 887 breast samples |
| computeChiSquaredTest | Compute chi-squared test |
| computeMultivariateBinaryMatrix | Compute the binary matrix with digitized divergence coding |
| computeMultivariateDigitization | Perform binary digitization |
| computeMultivariateSupport | Estimate the baseline support |
| computeQuantileMatrix | Compute quantile transformations |
| computeUnivariateDigitization | Perform ternary digitization |
| computeUnivariateSupport | Estimate the baseline support |
| computeUnivariateTernaryMatrix | Compute the ternary matrix with digitized divergence coding |
| findMultivariateGammaWithSupport | Find optimal gamma and corresponding support for list of feature sets |
| findUnivariateGammaWithSupport | Search for optimal gamma and associated support |
| msigdb_Hallmarks | Cancer Hallmark gene sets from the MSigDB collection |