Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

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Documentation for package ‘demuxmix’ version 1.7.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

csf	Hashtag oligonucleotide (HTO) counts from 2,590 droplets
Demuxmix	A class representing a set of mixture models fitted to HTO data
demuxmix	Demultiplexing using mixture models
Demuxmix-class	A class representing a set of mixture models fitted to HTO data
demuxmix-method	Demultiplexing using mixture models
dmmClassify	Return classification results from a Demuxmix object
dmmClassify-method	Return classification results from a Demuxmix object
dmmOverlap	Calculate the intersection of two components of a mixture model
dmmOverlap-method	Calculate the intersection of two components of a mixture model
dmmSimulateHto	Simulate HTO sequencing data
dmmSimulateHto-method	Simulate HTO sequencing data
pAcpt	A class representing a set of mixture models fitted to HTO data
pAcpt-method	A class representing a set of mixture models fitted to HTO data
pAcpt<-	A class representing a set of mixture models fitted to HTO data
pAcpt<--method	A class representing a set of mixture models fitted to HTO data
plotDmmHistogram	Plotting a histogram with mixture probability mass function
plotDmmHistogram-method	Plotting a histogram with mixture probability mass function
plotDmmPosteriorP	Plotting a histogram of posterior probabilities
plotDmmPosteriorP-method	Plotting a histogram of posterior probabilities
plotDmmScatter	Plotting RNA features versus HTO counts
plotDmmScatter-method	Plotting RNA features versus HTO counts
show-method	A class representing a set of mixture models fitted to HTO data
summary	Summarize classification results of a Demuxmix model
summary-method	A class representing a set of mixture models fitted to HTO data
summary-method	Summarize classification results of a Demuxmix model