Identifying differentially reactive regions from RNA structurome profiling data

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Documentation for package ‘dStruct’ version 1.12.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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calcDis	Calculates d score.
dCombs	Assesses within-group or between-group variation.
dStruct	Performs de novo discovery of differentially reactive regions.
dStructGuided	Performs guided discovery of differentially reactive regions.
dStructome	Performs de novo or guided discovery of differentially reactive regions for transcriptome-wide data.
getCombs	Identifies subgroupings of replicates for assessing within-group and between-group variation.
getContigRegions	Identifies contiguous regions from a list of nucleotide indices.
getRegions	Constructs potential differentially reactive regions.
lai2019	_Saccharomyces cerevisiae_ Structure-seq data
normalizer	Returns normalizer for reactivity vector.
plotDStructurome	Plots differentially reactive regions.
twoEightNormalize	Normalizes reactivity vector.
wan2014	_Homo sapiens_ PARS data