Automated functions for comparing various omic data from cbioportal.org


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Documentation for package ‘cbaf’ version 1.28.0

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automatedStatistics Perform the requested statistics for various studies / subgroups of a study.
availableData Check which Data types are available for each cancer study.
cleanDatabase Clean the created database(s)
heatmapOutput Generate heatmaps for various studies/subgroups of a study.
obtainMultipleStudies Obtain the requested data for various cancer studies.
obtainOneStudy Obtain the requested data for various subgroups of a cancer study.
processMultipleStudies Check Expression/methylation Profile for various cancer studies.
processOneStudy Check Expression/methylation Profile for various subgroups of a cancer study.
xlsxOutput Generate excel output for various studies/subgroups of a study.