12Mm250.gpr | Example GPR files |
9Mm137.gpr | Example GPR files |
agcontrolCode | Diagnostic plots and comparative boxplots for general hybridization, Agilent format |
agQuality | Diagnostic plots and comparative boxplots for general hybridization, Agilent format |
arrayControls | Internal arrayQuality functions |
arrayReplicates | Internal arrayQuality functions |
arrayScal | Internal arrayQuality functions |
BEbin.linear | Internal arrayQuality functions |
controlCodeHeebo | Internal arrayQuality functions |
controlCodeMeebo | Internal arrayQuality functions |
EMSplit | Internal arrayQuality functions |
getSpikeIds | Internal arrayQuality functions |
getSpikeIndex | Internal arrayQuality functions |
globalQuality | Quality measures for general hybridization. |
gpFlagWt | Internal arrayQuality functions |
gpQuality | Diagnostic plots and comparative boxplots for general hybridization |
heeboQuality | Diagnostics plots designed for HEEBO set controls |
heeboQualityPlots | Qualitative diagnostic plot for general hybridization, specific to HEEBO set. |
HeeboSpotTypes | Internal arrayQuality functions |
HsReferenceDB | Reference slides for Mouse oligos hybridizations |
index.html | Reference slides for Mouse oligos hybridizations |
maQualityPlots | Qualitative diagnostic plot for general hybridization |
meeboQuality | Diagnostics plots designed for MEEBO set controls |
meeboQualityPlots | Qualitative diagnostic plot for general hybridization, specific to MEEBO set. |
MeeboSpotTypes | Internal arrayQuality functions |
MmDEGenes | Known DE genes for Mouse quality hybridizations. |
MmReferenceDB | Reference slides for Mouse oligos hybridizations |
outputNormData | Internal arrayQuality functions |
PRv9mers | Print Run Quality version 9mers |
PRvQCHyb | Print run Quality version Quality Control Hybridization |
qcScore | Quality Control score for general hybridization |
qpBEplot.linear | Internal arrayQuality functions |
qpBoxplotMeebo | Internal arrayQuality functions |
qpDotPlots | Internal arrayQuality functions |
qpDotPlotsEEBO | Internal arrayQuality functions |
qpDotPlotsMeebo | Internal arrayQuality functions |
qpDotPlotsMeebo2 | Internal arrayQuality functions |
qpHexbin | Internal arrayQuality functions |
qpImage | Internal arrayQuality functions |
qpMAPlots | Internal arrayQuality functions |
qpMisMatchPlot | Internal arrayQuality functions |
qpPTLoess | Internal arrayQuality functions |
qpS2N | Internal arrayQuality functions |
qpS2Neebo | Internal arrayQuality functions |
qpS2Nmeebo | Internal arrayQuality functions |
qpTiling | Internal arrayQuality functions |
qualBoxplot | Comparative boxplot for general hybridization Quality Control |
quality2HTML | Internal arrayQuality functions |
qualityScore | Quality Control score for general hybridization |
readAgilent | Extraction of measures from Agilent (.txt) files. |
readAllSpikes | Internal arrayQuality functions |
readcontrolCode | Control status information |
readGPR | Reading GenePix gpr file |
readSpikeTypes | Read Spike Types File |
readSpot | Extraction of measures from Spot (.spot) files. |
replicatesAvariance | Internal arrayQuality functions |
scaleRefTable | General hybridization quality scaling |
setCtlCol | Internal arrayQuality functions |
slideQuality | Quality Control statistics for general hybridization |
Spike.Cy5vsCy3 | Internal arrayQuality functions |
Spike.Individual.Sensitivity | Internal arrayQuality functions |
Spike.MM.Scatter | Internal arrayQuality functions |
Spike.MMplot | Internal arrayQuality functions |
Spike.Sensitivity | Internal arrayQuality functions |
spotQuality | Diagnostic plots and comparative boxplots for general hybridization, Spot format |