Diagnostic Plots to Evaluate the Target Decoy Approach

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Documentation for package ‘TargetDecoy’ version 1.11.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

createPPlotObjects	Create all the PP plots in one figure for scores from multiple objects
createPPlotScores	Evaluate assumptions of the Target Decoys Approach for multiple search engines
decoyScoreTable	Prepare score table for decoys
evalTargetDecoys	Evaluate assumptions of the Target Decoys approach
evalTargetDecoysHist	Evaluate assumptions of the Target Decoys approach
evalTargetDecoysPPPlot	Evaluate assumptions of the Target Decoys approach
ModSwiss	Swiss-Prot MS-GF+ data
ModSwissXT	Swiss-Prot X!Tandem data