accessors | Accessors for TsIO objects |
beads_oligo | Accessors for TsIO objects |
beads_oligo-method | TsIO class |
beads_oligo<- | Accessors for TsIO objects |
beads_oligo<--method | TsIO class |
blastPrimers | Estimate primer off-targets using BLAST |
blastPrimers-method | Estimate primer off-targets using BLAST |
bone_marrow_genex | Mouse bone marrow 10x data |
checkPrimers | Check primers for complementarity |
checkPrimers-method | Check primers for complementarity |
chr11_genes | Chromosome 11 genes |
chr11_polyA_sites | Chromosome 11 polyA sites |
chr11_primers | Chromosome 11 primers |
chr11_truncated_txs | Chromosome 11 truncated transcripts |
chr11_truncated_txs_seq | Chromosome 11 truncated transcript sequences |
createBLASTDb | Estimate primer off-targets using BLAST |
createIORecord | Create boulder IO record |
createIORecord-method | Create boulder IO record |
createPrimerTrack | Export TAP-seq primers |
createPrimerTrack-method | Export TAP-seq primers |
designPrimers | Design primers |
designPrimers-method | Design primers |
estimateOffTargets | Estimate primer off-targets using BLAST |
exportPrimers | Export TAP-seq primers |
exportPrimerTrack | Export TAP-seq primers |
getTxsSeq | Get transcript sequences |
getTxsSeq-method | Get transcript sequences |
inferPolyASites | Infer polyA sites from droplet sequencing data |
min_primer_region | Accessors for TsIO objects |
min_primer_region-method | TsIO class |
min_primer_region<- | Accessors for TsIO objects |
min_primer_region<--method | TsIO class |
pcr_products | Accessors for TsIO objects |
pcr_products-method | TsIO class |
pcr_products-method | TsIOList class |
pickPrimers | Pick best TAP-seq primers |
pickPrimers-method | Pick best TAP-seq primers |
plotTargetGenes | Select target genes |
primerDataFrame | Export TAP-seq primers |
primerDataFrame-method | Export TAP-seq primers |
primer_max_tm | Accessors for TsIO objects |
primer_max_tm-method | TsIO class |
primer_max_tm<- | Accessors for TsIO objects |
primer_max_tm<--method | TsIO class |
primer_min_tm | Accessors for TsIO objects |
primer_min_tm-method | TsIO class |
primer_min_tm<- | Accessors for TsIO objects |
primer_min_tm<--method | TsIO class |
primer_num_return | Accessors for TsIO objects |
primer_num_return-method | TsIO class |
primer_num_return<- | Accessors for TsIO objects |
primer_num_return<--method | TsIO class |
primer_opt_tm | Accessors for TsIO objects |
primer_opt_tm-method | TsIO class |
primer_opt_tm<- | Accessors for TsIO objects |
primer_opt_tm<--method | TsIO class |
product_size_range | Accessors for TsIO objects |
product_size_range-method | TsIO class |
product_size_range<- | Accessors for TsIO objects |
product_size_range<--method | TsIO class |
reverse_primer | Accessors for TsIO objects |
reverse_primer-method | TsIO class |
reverse_primer<- | Accessors for TsIO objects |
reverse_primer<--method | TsIO class |
selectTargetGenes | Select target genes |
sequence_id | Accessors for TsIO objects |
sequence_id-method | TsIO class |
sequence_id-method | TsIOList class |
sequence_id<- | Accessors for TsIO objects |
sequence_id<--method | TsIO class |
sequence_template | Accessors for TsIO objects |
sequence_template-method | TsIO class |
sequence_template-method | TsIOList class |
TAPseq | TAPseq: R-package to design primers for TAP-seq |
TAPseqInput | Create TAPseq input from target sequences |
tapseq_primers | Accessors for TsIO objects |
tapseq_primers-method | TsIO class |
tapseq_primers-method | TsIOList class |
target_annot | Accessors for TsIO objects |
target_annot-method | TsIO class |
target_annot-method | TsIOList class |
target_annot<- | Accessors for TsIO objects |
target_annot<--method | TsIO class |
target_sequence | Accessors for TsIO objects |
target_sequence-method | TsIO class |
target_sequence-method | TsIOList class |
target_sequence<- | Accessors for TsIO objects |
target_sequence<--method | TsIO class |
truncateTxsPolyA | Truncate transcripts at polyA sites |
truncateTxsPolyA-method | Truncate transcripts at polyA sites |
TsIO | TsIO class |
TsIO-class | TsIO class |
TsIOList | TsIOList class |
TsIOList-class | TsIOList class |