Targeted scRNA-seq primer design for TAP-seq


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Documentation for package ‘TAPseq’ version 1.18.0

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accessors Accessors for TsIO objects
beads_oligo Accessors for TsIO objects
beads_oligo-method TsIO class
beads_oligo<- Accessors for TsIO objects
beads_oligo<--method TsIO class
blastPrimers Estimate primer off-targets using BLAST
blastPrimers-method Estimate primer off-targets using BLAST
bone_marrow_genex Mouse bone marrow 10x data
checkPrimers Check primers for complementarity
checkPrimers-method Check primers for complementarity
chr11_genes Chromosome 11 genes
chr11_polyA_sites Chromosome 11 polyA sites
chr11_primers Chromosome 11 primers
chr11_truncated_txs Chromosome 11 truncated transcripts
chr11_truncated_txs_seq Chromosome 11 truncated transcript sequences
createBLASTDb Estimate primer off-targets using BLAST
createIORecord Create boulder IO record
createIORecord-method Create boulder IO record
createPrimerTrack Export TAP-seq primers
createPrimerTrack-method Export TAP-seq primers
designPrimers Design primers
designPrimers-method Design primers
estimateOffTargets Estimate primer off-targets using BLAST
exportPrimers Export TAP-seq primers
exportPrimerTrack Export TAP-seq primers
getTxsSeq Get transcript sequences
getTxsSeq-method Get transcript sequences
inferPolyASites Infer polyA sites from droplet sequencing data
min_primer_region Accessors for TsIO objects
min_primer_region-method TsIO class
min_primer_region<- Accessors for TsIO objects
min_primer_region<--method TsIO class
pcr_products Accessors for TsIO objects
pcr_products-method TsIO class
pcr_products-method TsIOList class
pickPrimers Pick best TAP-seq primers
pickPrimers-method Pick best TAP-seq primers
plotTargetGenes Select target genes
primerDataFrame Export TAP-seq primers
primerDataFrame-method Export TAP-seq primers
primer_max_tm Accessors for TsIO objects
primer_max_tm-method TsIO class
primer_max_tm<- Accessors for TsIO objects
primer_max_tm<--method TsIO class
primer_min_tm Accessors for TsIO objects
primer_min_tm-method TsIO class
primer_min_tm<- Accessors for TsIO objects
primer_min_tm<--method TsIO class
primer_num_return Accessors for TsIO objects
primer_num_return-method TsIO class
primer_num_return<- Accessors for TsIO objects
primer_num_return<--method TsIO class
primer_opt_tm Accessors for TsIO objects
primer_opt_tm-method TsIO class
primer_opt_tm<- Accessors for TsIO objects
primer_opt_tm<--method TsIO class
product_size_range Accessors for TsIO objects
product_size_range-method TsIO class
product_size_range<- Accessors for TsIO objects
product_size_range<--method TsIO class
reverse_primer Accessors for TsIO objects
reverse_primer-method TsIO class
reverse_primer<- Accessors for TsIO objects
reverse_primer<--method TsIO class
selectTargetGenes Select target genes
sequence_id Accessors for TsIO objects
sequence_id-method TsIO class
sequence_id-method TsIOList class
sequence_id<- Accessors for TsIO objects
sequence_id<--method TsIO class
sequence_template Accessors for TsIO objects
sequence_template-method TsIO class
sequence_template-method TsIOList class
TAPseq TAPseq: R-package to design primers for TAP-seq
TAPseqInput Create TAPseq input from target sequences
tapseq_primers Accessors for TsIO objects
tapseq_primers-method TsIO class
tapseq_primers-method TsIOList class
target_annot Accessors for TsIO objects
target_annot-method TsIO class
target_annot-method TsIOList class
target_annot<- Accessors for TsIO objects
target_annot<--method TsIO class
target_sequence Accessors for TsIO objects
target_sequence-method TsIO class
target_sequence-method TsIOList class
target_sequence<- Accessors for TsIO objects
target_sequence<--method TsIO class
truncateTxsPolyA Truncate transcripts at polyA sites
truncateTxsPolyA-method Truncate transcripts at polyA sites
TsIO TsIO class
TsIO-class TsIO class
TsIOList TsIOList class
TsIOList-class TsIOList class