Type: Package
Package: SpaceMarkers
Title: Spatial Interaction Markers
Version: 1.2.1
Authors@R: c(
    person(given = "Atul", family = "Deshpande", email = "adeshpande@jhu.edu", role = c("aut", "cre"), comment = c(ORCID="0000-0001-5144-6924")),
    person(given = "Ludmila", family = "Danilova", email = "ldanilo1@jhmi.edu", role = "ctb"),
    person(given = "Dmitrijs", family = "Lvovs", email = "dlvovs1@jh.edu", role = "ctb", comment = c(ORCID = "0009-0003-2152-6853"))
  )
BugReports: https://github.com/DeshpandeLab/SpaceMarkers/issues
URL: https://github.com/DeshpandeLab/SpaceMarkers
Description: Spatial transcriptomic technologies have helped to resolve the connection
            between gene expression and the 2D orientation of tissues relative to each other.
            However, the limited single-cell resolution makes it difficult to highlight the most 
            important molecular interactions in these tissues. SpaceMarkers, R/Bioconductor software,
            can help to find molecular interactions, by identifying genes associated with latent space 
            interactions in spatial transcriptomics.
Depends: R (>= 4.4.0)
biocViews: SingleCell, GeneExpression, Software, Spatial,
        Transcriptomics
Imports: matrixStats, matrixTests, rstatix, spatstat.explore,
        spatstat.geom, ape, hdf5r, jsonlite, Matrix, qvalue, stats,
        utils, methods
Suggests: data.table, devtools, dplyr, ggplot2, hrbrthemes, knitr,
        RColorBrewer, cowplot, readbitmap, rjson, rmarkdown, BiocStyle,
        testthat (>= 3.0.0), viridis, CoGAPS
Enhances: BiocParallel
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
License: MIT + file LICENSE
git_url: https://git.bioconductor.org/packages/SpaceMarkers
git_branch: RELEASE_3_20
git_last_commit: 46305b2
git_last_commit_date: 2024-10-31
Repository: Bioconductor 3.20
Date/Publication: 2024-11-08
NeedsCompilation: no
Packaged: 2024-11-09 00:13:31 UTC; biocbuild
Author: Atul Deshpande [aut, cre] (<https://orcid.org/0000-0001-5144-6924>),
  Ludmila Danilova [ctb],
  Dmitrijs Lvovs [ctb] (<https://orcid.org/0009-0003-2152-6853>)
Maintainer: Atul Deshpande <adeshpande@jhu.edu>
Built: R 4.4.1; ; 2024-11-09 22:13:10 UTC; unix
