A B C D E F G H I K L M N O P Q R S V W X Y
GWASTools-package | Tools for Genome Wide Association Studies |
alleleFrequency | Allelic frequency |
allequal | Test if two objects have the same elements |
anomDetectBAF | BAF Method for Chromosome Anomaly Detection |
anomDetectLOH | LOH Method for Chromosome Anomaly Detection |
anomFilterBAF | BAF Method for Chromosome Anomaly Detection |
anomIdentifyLowQuality | Identify low quality samples |
anomSegmentBAF | BAF Method for Chromosome Anomaly Detection |
anomSegStats | Calculate LRR and BAF statistics for anomalous segments |
anomStatsPlot | Calculate LRR and BAF statistics for anomalous segments |
apartSnpSelection | Random selection of SNPs |
asSnpMatrix | Utilities for snpStats |
assocCoxPH | Cox proportional hazards |
assocRegression | Association testing with regression |
assocTestCPH | Defunct Functions in Package 'GWASTools' |
assocTestFisherExact | Defunct Functions in Package 'GWASTools' |
assocTestRegression | Defunct Functions in Package 'GWASTools' |
autosomeCode | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
autosomeCode-method | Class GdsGenotypeReader |
autosomeCode-method | Class GdsIntensityReader |
autosomeCode-method | Class GenotypeData |
autosomeCode-method | Class IntensityData |
autosomeCode-method | Class MatrixGenotypeReader |
autosomeCode-method | Class NcdfGenotypeReader |
autosomeCode-method | Class NcdfIntensityReader |
autosomeCode-method | Class SnpAnotationDataFrame |
autosomeCode-method | Class SnpAnotationSQLite |
BAFfromClusterMeans | B Allele Frequency & Log R Ratio Calculation |
BAFfromGenotypes | B Allele Frequency & Log R Ratio Calculation |
batchChisqTest | Batch Effects of Genotyping |
batchFisherTest | Batch Effects of Genotyping |
centromeres | Centromere base positions |
centromeres.hg18 | Centromere base positions |
centromeres.hg19 | Centromere base positions |
centromeres.hg38 | Centromere base positions |
checkGenotypeFile | Write genotypic calls and/or associated metrics to a GDS or netCDF file. |
checkImputedDosageFile | Create and check a GDS or NetCDF file with imputed dosages |
checkIntensityFile | Write genotypic calls and/or associated metrics to a GDS or netCDF file. |
checkNcdfGds | Convert between NetCDF and GDS format |
chromIntensityPlot | Plot B Allele Frequency and/or Log R Ratio, R or Theta values for samples by probe position on a chromosome |
close-method | Class GdsReader |
close-method | Class GenotypeData |
close-method | Class IntensityData |
close-method | Class NcdfReader |
close-method | Class ScanAnotationSQLite |
close-method | Class SnpAnotationSQLite |
convertGdsNcdf | Convert between NetCDF and GDS format |
convertNcdfGds | Convert between NetCDF and GDS format |
convertVcfGds | Defunct Functions in Package 'GWASTools' |
createAffyIntensityFile | Write genotypic calls and/or associated metrics to a GDS or netCDF file. |
createDataFile | Write genotypic calls and/or associated metrics to a GDS or netCDF file. |
currentFilter | Class GenotypeIterator |
currentFilter-method | Class GenotypeIterator |
dupDosageCorAcrossDatasets | Functions to check discordance and allelic dosage correlation across datasets |
duplicateDiscordance | Duplicate discordance |
duplicateDiscordanceAcrossDatasets | Functions to check discordance and allelic dosage correlation across datasets |
duplicateDiscordanceProbability | Probability of duplicate discordance |
exactHWE | Hardy-Weinberg Equilibrium testing |
findBAFvariance | Find chromosomal areas with high BAlleleFreq (or LogRRatio) standard deviation |
gdsCheckImputedDosage | Defunct Functions in Package 'GWASTools' |
GdsGenotypeReader | Class GdsGenotypeReader |
GdsGenotypeReader-class | Class GdsGenotypeReader |
gdsImputedDosage | Defunct Functions in Package 'GWASTools' |
GdsIntensityReader | Class GdsIntensityReader |
GdsIntensityReader-class | Class GdsIntensityReader |
GdsReader | Class GdsReader |
GdsReader-class | Class GdsReader |
gdsSetMissingGenotypes | Defunct Functions in Package 'GWASTools' |
gdsSubset | Write a subset of data in a GDS file to a new GDS file |
gdsSubsetCheck | Write a subset of data in a GDS file to a new GDS file |
genoClusterPlot | SNP cluster plots |
genoClusterPlotByBatch | SNP cluster plots |
genoDataAsVCF | Utility to write VCF file |
GenotypeBlockIterator | Class GenotypeIterator |
GenotypeBlockIterator-class | Class GenotypeIterator |
GenotypeData | Class GenotypeData |
GenotypeData-class | Class GenotypeData |
GenotypeIterator | Class GenotypeIterator |
GenotypeIterator-class | Class GenotypeIterator |
genotypeToCharacter | Convert number of A alleles to character genotypes |
getAlleleA | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getAlleleA-method | Class GdsGenotypeReader |
getAlleleA-method | Class GenotypeData |
getAlleleA-method | Class GenotypeIterator |
getAlleleA-method | Class SnpAnotationDataFrame |
getAlleleA-method | Class SnpAnotationSQLite |
getAlleleB | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getAlleleB-method | Class GdsGenotypeReader |
getAlleleB-method | Class GenotypeData |
getAlleleB-method | Class GenotypeIterator |
getAlleleB-method | Class SnpAnotationDataFrame |
getAlleleB-method | Class SnpAnotationSQLite |
getAnnotation | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getAnnotation-method | Class ScanAnotationDataFrame |
getAnnotation-method | Class ScanAnotationSQLite |
getAnnotation-method | Class SnpAnotationDataFrame |
getAnnotation-method | Class SnpAnotationSQLite |
getAttribute | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getAttribute-method | Class GdsReader |
getAttribute-method | Class NcdfReader |
getBAlleleFreq | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getBAlleleFreq-method | Class GdsIntensityReader |
getBAlleleFreq-method | Class IntensityData |
getBAlleleFreq-method | Class NcdfIntensityReader |
getChromosome | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getChromosome-method | Class GdsGenotypeReader |
getChromosome-method | Class GdsIntensityReader |
getChromosome-method | Class GenotypeData |
getChromosome-method | Class GenotypeIterator |
getChromosome-method | Class IntensityData |
getChromosome-method | Class MatrixGenotypeReader |
getChromosome-method | Class NcdfGenotypeReader |
getChromosome-method | Class NcdfIntensityReader |
getChromosome-method | Class SnpAnotationDataFrame |
getChromosome-method | Class SnpAnotationSQLite |
getDimension | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getDimension-method | Class GdsReader |
getDimension-method | Class NcdfReader |
getDimensionNames | Class NcdfReader |
getDimensionNames-method | Class NcdfReader |
getGenotype | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getGenotype-method | Class GdsGenotypeReader |
getGenotype-method | Class GenotypeData |
getGenotype-method | Class MatrixGenotypeReader |
getGenotype-method | Class NcdfGenotypeReader |
getGenotypeSelection | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getGenotypeSelection-method | Class GdsGenotypeReader |
getGenotypeSelection-method | Class GenotypeData |
getGenotypeSelection-method | Class GenotypeIterator |
getGenotypeSelection-method | Class MatrixGenotypeReader |
getLogRRatio | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getLogRRatio-method | Class GdsIntensityReader |
getLogRRatio-method | Class IntensityData |
getLogRRatio-method | Class NcdfIntensityReader |
getMetadata | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getMetadata-method | Class ScanAnotationDataFrame |
getMetadata-method | Class ScanAnotationSQLite |
getMetadata-method | Class SnpAnotationDataFrame |
getMetadata-method | Class SnpAnotationSQLite |
getNodeDescription | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getNodeDescription-method | Class GdsReader |
getobj | Get an R object stored in an Rdata file |
getPosition | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getPosition-method | Class GdsGenotypeReader |
getPosition-method | Class GdsIntensityReader |
getPosition-method | Class GenotypeData |
getPosition-method | Class GenotypeIterator |
getPosition-method | Class IntensityData |
getPosition-method | Class MatrixGenotypeReader |
getPosition-method | Class NcdfGenotypeReader |
getPosition-method | Class NcdfIntensityReader |
getPosition-method | Class SnpAnotationDataFrame |
getPosition-method | Class SnpAnotationSQLite |
getQuality | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getQuality-method | Class GdsIntensityReader |
getQuality-method | Class IntensityData |
getQuality-method | Class NcdfIntensityReader |
getQuery | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getQuery-method | Class ScanAnotationSQLite |
getQuery-method | Class SnpAnotationSQLite |
getScanAnnotation | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getScanAnnotation-method | Class GenotypeData |
getScanID | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getScanID-method | Class GdsGenotypeReader |
getScanID-method | Class GdsIntensityReader |
getScanID-method | Class GenotypeData |
getScanID-method | Class IntensityData |
getScanID-method | Class MatrixGenotypeReader |
getScanID-method | Class NcdfGenotypeReader |
getScanID-method | Class NcdfIntensityReader |
getScanID-method | Class ScanAnotationDataFrame |
getScanID-method | Class ScanAnotationSQLite |
getScanVariable | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getScanVariable-method | Class GenotypeData |
getScanVariable-method | Class IntensityData |
getScanVariableNames | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getScanVariableNames-method | Class GenotypeData |
getScanVariableNames-method | Class IntensityData |
getSex | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getSex-method | Class GenotypeData |
getSex-method | Class IntensityData |
getSex-method | Class ScanAnotationDataFrame |
getSex-method | Class ScanAnotationSQLite |
getSnpAnnotation | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getSnpAnnotation-method | Class GenotypeData |
getSnpID | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getSnpID-method | Class GdsGenotypeReader |
getSnpID-method | Class GdsIntensityReader |
getSnpID-method | Class GenotypeData |
getSnpID-method | Class GenotypeIterator |
getSnpID-method | Class IntensityData |
getSnpID-method | Class MatrixGenotypeReader |
getSnpID-method | Class NcdfGenotypeReader |
getSnpID-method | Class NcdfIntensityReader |
getSnpID-method | Class SnpAnotationDataFrame |
getSnpID-method | Class SnpAnotationSQLite |
getSnpVariable | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getSnpVariable-method | Class GenotypeData |
getSnpVariable-method | Class GenotypeIterator |
getSnpVariable-method | Class IntensityData |
getSnpVariableNames | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getSnpVariableNames-method | Class GenotypeData |
getSnpVariableNames-method | Class IntensityData |
getVariable | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getVariable-method | Class GdsGenotypeReader |
getVariable-method | Class GdsIntensityReader |
getVariable-method | Class GdsReader |
getVariable-method | Class GenotypeData |
getVariable-method | Class IntensityData |
getVariable-method | Class NcdfGenotypeReader |
getVariable-method | Class NcdfIntensityReader |
getVariable-method | Class NcdfReader |
getVariable-method | Class ScanAnotationDataFrame |
getVariable-method | Class ScanAnotationSQLite |
getVariable-method | Class SnpAnotationDataFrame |
getVariable-method | Class SnpAnotationSQLite |
getVariableNames | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getVariableNames-method | Class GdsReader |
getVariableNames-method | Class NcdfReader |
getVariableNames-method | Class ScanAnotationDataFrame |
getVariableNames-method | Class ScanAnotationSQLite |
getVariableNames-method | Class SnpAnotationDataFrame |
getVariableNames-method | Class SnpAnotationSQLite |
getX | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getX-method | Class GdsIntensityReader |
getX-method | Class IntensityData |
getX-method | Class NcdfIntensityReader |
getY | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
getY-method | Class GdsIntensityReader |
getY-method | Class IntensityData |
getY-method | Class NcdfIntensityReader |
gwasExactHW | Defunct Functions in Package 'GWASTools' |
GWASTools | Tools for Genome Wide Association Studies |
GWASTools-defunct | Defunct Functions in Package 'GWASTools' |
hasBAlleleFreq | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasBAlleleFreq-method | Class GdsIntensityReader |
hasBAlleleFreq-method | Class IntensityData |
hasBAlleleFreq-method | Class NcdfIntensityReader |
hasCoordVariable | Class NcdfReader |
hasCoordVariable-method | Class NcdfReader |
hasLogRRatio | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasLogRRatio-method | Class GdsIntensityReader |
hasLogRRatio-method | Class IntensityData |
hasLogRRatio-method | Class NcdfIntensityReader |
hasQuality | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasQuality-method | Class GdsIntensityReader |
hasQuality-method | Class IntensityData |
hasQuality-method | Class NcdfIntensityReader |
hasScanAnnotation | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasScanAnnotation-method | Class GenotypeData |
hasScanAnnotation-method | Class IntensityData |
hasScanVariable | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasScanVariable-method | Class GenotypeData |
hasScanVariable-method | Class IntensityData |
hasSex | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasSex-method | Class GenotypeData |
hasSex-method | Class IntensityData |
hasSex-method | Class ScanAnotationDataFrame |
hasSex-method | Class ScanAnotationSQLite |
hasSnpAnnotation | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasSnpAnnotation-method | Class GenotypeData |
hasSnpAnnotation-method | Class IntensityData |
hasSnpVariable | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasSnpVariable-method | Class GenotypeData |
hasSnpVariable-method | Class IntensityData |
hasVariable | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasVariable-method | Class GdsReader |
hasVariable-method | Class GenotypeData |
hasVariable-method | Class IntensityData |
hasVariable-method | Class NcdfReader |
hasVariable-method | Class ScanAnotationDataFrame |
hasVariable-method | Class ScanAnotationSQLite |
hasVariable-method | Class SnpAnotationDataFrame |
hasVariable-method | Class SnpAnotationSQLite |
hasX | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasX-method | Class GdsIntensityReader |
hasX-method | Class IntensityData |
hasX-method | Class NcdfIntensityReader |
hasY | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
hasY-method | Class GdsIntensityReader |
hasY-method | Class IntensityData |
hasY-method | Class NcdfIntensityReader |
hetByScanChrom | Heterozygosity rates by scan and chromosome |
hetBySnpSex | Heterozygosity by SNP and sex |
HLA | HLA region base positions |
HLA.hg18 | HLA region base positions |
HLA.hg19 | HLA region base positions |
HLA.hg38 | HLA region base positions |
ibdAreasDraw | Plot theoretical and observed identity by descent values and assign relationships |
ibdAssignRelatedness | Plot theoretical and observed identity by descent values and assign relationships |
ibdAssignRelatednessKing | Plot theoretical and observed identity by descent values and assign relationships |
ibdPlot | Plot theoretical and observed identity by descent values and assign relationships |
imputedDosageFile | Create and check a GDS or NetCDF file with imputed dosages |
IntensityData | Class IntensityData |
IntensityData-class | Class IntensityData |
intensityOutliersPlot | Plot mean intensity and highlight outliers |
iterateFilter | Class GenotypeIterator |
iterateFilter-method | Class GenotypeIterator |
kingIBS0FSCI | Plot theoretical and observed identity by descent values and assign relationships |
lastFilter | Class GenotypeIterator |
lastFilter-method | Class GenotypeIterator |
lastFilter<- | Class GenotypeIterator |
lastFilter<--method | Class GenotypeIterator |
manhattanPlot | Manhattan plot for genome wide association tests |
MatrixGenotypeReader | Class MatrixGenotypeReader |
MatrixGenotypeReader-class | Class MatrixGenotypeReader |
MchromCode | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
MchromCode-method | Class GdsGenotypeReader |
MchromCode-method | Class GdsIntensityReader |
MchromCode-method | Class GenotypeData |
MchromCode-method | Class IntensityData |
MchromCode-method | Class MatrixGenotypeReader |
MchromCode-method | Class NcdfGenotypeReader |
MchromCode-method | Class NcdfIntensityReader |
MchromCode-method | Class SnpAnotationDataFrame |
MchromCode-method | Class SnpAnotationSQLite |
meanIntensityByScanChrom | Calculate Means and Standard Deviations of Intensities |
meanSdByChromWindow | Find chromosomal areas with high BAlleleFreq (or LogRRatio) standard deviation |
medianSdOverAutosomes | Find chromosomal areas with high BAlleleFreq (or LogRRatio) standard deviation |
mendelErr | Mendelian Error Checking |
mendelList | Mendelian Error Checking |
mendelListAsDataFrame | Mendelian Error Checking |
minorAlleleDetectionAccuracy | Functions to check discordance and allelic dosage correlation across datasets |
missingGenotypeByScanChrom | Missing Counts per Scan per Chromosome |
missingGenotypeBySnpSex | Missing Counts per SNP by Sex |
ncdfAddData | Defunct Functions in Package 'GWASTools' |
ncdfAddIntensity | Defunct Functions in Package 'GWASTools' |
ncdfCheckGenotype | Defunct Functions in Package 'GWASTools' |
ncdfCheckIntensity | Defunct Functions in Package 'GWASTools' |
ncdfCreate | Defunct Functions in Package 'GWASTools' |
NcdfGenotypeReader | Class NcdfGenotypeReader |
NcdfGenotypeReader-class | Class NcdfGenotypeReader |
ncdfImputedDosage | Defunct Functions in Package 'GWASTools' |
NcdfIntensityReader | Class NcdfIntensityReader |
NcdfIntensityReader-class | Class NcdfIntensityReader |
NcdfReader | Class NcdfReader |
NcdfReader-class | Class NcdfReader |
ncdfSetMissingGenotypes | Defunct Functions in Package 'GWASTools' |
ncdfSubset | Defunct Functions in Package 'GWASTools' |
ncdfSubsetCheck | Defunct Functions in Package 'GWASTools' |
nscan | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
nscan-method | Class GdsGenotypeReader |
nscan-method | Class GdsIntensityReader |
nscan-method | Class GenotypeData |
nscan-method | Class IntensityData |
nscan-method | Class MatrixGenotypeReader |
nscan-method | Class NcdfGenotypeReader |
nscan-method | Class NcdfIntensityReader |
nscan-method | Class ScanAnotationSQLite |
nsnp | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
nsnp-method | Class GdsGenotypeReader |
nsnp-method | Class GdsIntensityReader |
nsnp-method | Class GenotypeData |
nsnp-method | Class IntensityData |
nsnp-method | Class MatrixGenotypeReader |
nsnp-method | Class NcdfGenotypeReader |
nsnp-method | Class NcdfIntensityReader |
nsnp-method | Class SnpAnotationSQLite |
open-method | Class GdsReader |
open-method | Class GenotypeData |
open-method | Class IntensityData |
open-method | Class NcdfReader |
open-method | Class ScanAnotationSQLite |
open-method | Class SnpAnotationSQLite |
pasteSorted | Paste two vectors sorted pairwise |
pcaSnpFilters | Regions of SNP-PC correlation to filter for Principal Component Analysis |
pcaSnpFilters.hg18 | Regions of SNP-PC correlation to filter for Principal Component Analysis |
pcaSnpFilters.hg19 | Regions of SNP-PC correlation to filter for Principal Component Analysis |
pcaSnpFilters.hg38 | Regions of SNP-PC correlation to filter for Principal Component Analysis |
pedigreeCheck | Testing for internal consistency of pedigrees |
pedigreeDeleteDuplicates | Remove duplicates from a pedigree |
pedigreeMaxUnrelated | Find a maximal set of unrelated individuals in a subset of a pedigree. |
pedigreePairwiseRelatedness | Assign relatedness from pedigree data |
plinkCheck | Utilities to create and check PLINK files |
plinkToNcdf | Defunct Functions in Package 'GWASTools' |
plinkWrite | Utilities to create and check PLINK files |
pseudoautoIntensityPlot | Plot B Allele Frequency and Log R Ratio for the X and Y chromosomes, overlaying XY SNPs |
pseudoautosomal | Pseudoautosomal region base positions |
pseudoautosomal.hg18 | Pseudoautosomal region base positions |
pseudoautosomal.hg19 | Pseudoautosomal region base positions |
pseudoautosomal.hg38 | Pseudoautosomal region base positions |
qqPlot | QQ plot for genome wide assocation studies |
qualityScoreByScan | Mean and median quality score for scans |
qualityScoreBySnp | Mean and median quality score for SNPs |
readWriteFirst | Read and write the first n lines of a file |
relationsMeanVar | Mean and Variance information for full-sibs, half-sibs, first-cousins |
resetIterator | Class GenotypeIterator |
resetIterator-method | Class GenotypeIterator |
saveas | Save an R object with a new name |
ScanAnnotationDataFrame | Class ScanAnotationDataFrame |
ScanAnnotationDataFrame-class | Class ScanAnotationDataFrame |
ScanAnnotationSQLite | Class ScanAnotationSQLite |
ScanAnnotationSQLite-class | Class ScanAnotationSQLite |
sdByScanChromWindow | Find chromosomal areas with high BAlleleFreq (or LogRRatio) standard deviation |
setMissingGenotypes | Write a new netCDF or GDS file, setting certain SNPs to missing |
show-method | Class GdsReader |
show-method | Class GenotypeData |
show-method | Class IntensityData |
show-method | Class MatrixGenotypeReader |
show-method | Class NcdfReader |
show-method | Class ScanAnotationSQLite |
show-method | Class SnpAnotationSQLite |
simulateGenotypeMatrix | Simulate Genotype or Intensity Matrix & Load into GDS/NetCDF File |
simulateIntensityMatrix | Simulate Genotype or Intensity Matrix & Load into GDS/NetCDF File |
SnpAnnotationDataFrame | Class SnpAnotationDataFrame |
SnpAnnotationDataFrame-class | Class SnpAnotationDataFrame |
SnpAnnotationSQLite | Class SnpAnotationSQLite |
SnpAnnotationSQLite-class | Class SnpAnotationSQLite |
snpCorrelationPlot | SNP correlation plot |
snpFilter | Class GenotypeIterator |
snpFilter-method | Class GenotypeIterator |
vcfCheck | Utility to write VCF file |
vcfWrite | Utility to write VCF file |
writeAnnotation | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
writeAnnotation-method | Class ScanAnotationSQLite |
writeAnnotation-method | Class SnpAnotationSQLite |
writeMetadata | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
writeMetadata-method | Class ScanAnotationSQLite |
writeMetadata-method | Class SnpAnotationSQLite |
XchromCode | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
XchromCode-method | Class GdsGenotypeReader |
XchromCode-method | Class GdsIntensityReader |
XchromCode-method | Class GenotypeData |
XchromCode-method | Class IntensityData |
XchromCode-method | Class MatrixGenotypeReader |
XchromCode-method | Class NcdfGenotypeReader |
XchromCode-method | Class NcdfIntensityReader |
XchromCode-method | Class SnpAnotationDataFrame |
XchromCode-method | Class SnpAnotationSQLite |
XYchromCode | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
XYchromCode-method | Class GdsGenotypeReader |
XYchromCode-method | Class GdsIntensityReader |
XYchromCode-method | Class GenotypeData |
XYchromCode-method | Class IntensityData |
XYchromCode-method | Class MatrixGenotypeReader |
XYchromCode-method | Class NcdfGenotypeReader |
XYchromCode-method | Class NcdfIntensityReader |
XYchromCode-method | Class SnpAnotationDataFrame |
XYchromCode-method | Class SnpAnotationSQLite |
YchromCode | Accessors for variables in GenotypeData and IntensityData classes and their component classes |
YchromCode-method | Class GdsGenotypeReader |
YchromCode-method | Class GdsIntensityReader |
YchromCode-method | Class GenotypeData |
YchromCode-method | Class IntensityData |
YchromCode-method | Class MatrixGenotypeReader |
YchromCode-method | Class NcdfGenotypeReader |
YchromCode-method | Class NcdfIntensityReader |
YchromCode-method | Class SnpAnotationDataFrame |
YchromCode-method | Class SnpAnotationSQLite |