A Bioconductor package for accessing GA4GH API data servers

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Documentation for package ‘GA4GHclient’ version 1.29.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

GA4GHclient-package	A Bioconductor package for accessing GA4GH API data server
GA4GHclient	A Bioconductor package for accessing GA4GH API data server
getBiosample	getBiosample function
getCallSet	getCallSet function
getDataset	getDataset function
getExpressionLevel	getExpressionLevel function
getFeature	getFeature function
getFeatureSet	getFeatureSet function
getIndividual	getIndividual function
getReadGroupSet	getReadGroupSet function
getReference	getReference function
getReferenceSet	getReferenceSet function
getRnaQuantification	getRnaQuantification function
getRnaQuantificationSet	getRnaQuantificationSet function
getVariant	getVariant function
getVariantAnnotationSet	Gets getVariantAnnotationSet function
getVariantSet	getVariantSet function.
HGVSnames	Generate genomic variant data to HGVS nomenclature
listReferenceBases	listReferenceBases function
makeVCFFromGA4GHResponse	makeVCFFromGA4GHResponse function
makeVCFHeaderFromGA4GHResponse	makeVCFHeaderFromGA4GHResponse function
searchBiosamples	searchBiosamples function
searchCallSets	searchCallSets function
searchDatasets	searchDatasets function
searchExpressionLevels	searchExpressionLevels function
searchFeatures	searchFeatures function
searchFeatureSets	searchFeatureSets function
searchIndividuals	searchIndividuals function
searchPhenotypeAssociations	searchPhenotypeAssociations function
searchPhenotypeAssociationSets	searchPhenotypeAssociationSets function
searchReadGroupSets	searchReadGroupSets function
searchReads	searchReads function
searchReferences	searchReferences function
searchReferenceSets	searchReferenceSets function
searchRnaQuantifications	searchRnaQuantifications function
searchRnaQuantificationSets	searchRnaQuantificationSets function
searchVariantAnnotations	searchVariantAnnotations function
searchVariantAnnotationSets	searchVariantAnnotationSets function
searchVariants	searchVariants function
searchVariantsByGRanges	searchVariantsByGranges function
searchVariantSets	searchVariantSets function