An effective identification of alternative splicing events using junction arrays and RNA-Seq data

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Documentation for package ‘EventPointer’ version 3.13.0

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AllEvents_RNASeq Alternative splicing events detected by EventPointer
AllEvents_RNASeq_MP Alternative splicing multi-path events detected by EventPointer
ArrayDatamultipath Preprocessed arrays data with multi-path events
ArraysData Preprocessed arrays data
CDFfromGTF CDF file creation for EventPointer
CDFfromGTF_Multipath CDF file creation for EventPointer (MultiPath)
CreateExSmatrix Events X RBPS matrix creation
EventDetection Detect splicing events using EventPointer methodology
EventDetectionMultipath Detect splicing multipath events using EventPointer methodology
EventDetection_transcriptome EventDetection_transcriptome
EventPointer EventPointer
EventPointer_Bootstraps EventPointer_Bootstraps
EventPointer_IGV EventPointer IGV Visualization
EventPointer_RNASeq Statistical analysis of alternative splcing events for RNASeq data
EventPointer_RNASeq_IGV EventPointer RNASeq IGV Visualization
EventPointer_RNASeq_TranRef EventPointer_RNASeq_TranRef
EventPointer_RNASeq_TranRef_IGV EventPointer RNASeq from reference transcriptome IGV Visualization
Events_ReClassification Events_ReClassification
EventXtrans relationship between isoforms and events
FindPrimers FindPrimers
Fit Result of EventPointer_Bootstrap
getbootstrapdata getbootstrapdata
GetPSI_FromTranRef GetPSI_FromTranRef
MyPrimers Data frame with primers design for conventional PCR
MyPrimers_taqman Data frame with primers design for taqman PCR
PrepareBam_EP Bam files preparation for EventPointer
Protein_Domain_Enrichment Protein_Domain_Enrichment
PSIss relationship between isoforms and events
PSI_Statistic PSI_Statistic
ResulTable ResulTable
SF_Prediction Splicing Factor Prediction
SG_reclassify Splicing graph example for Events_ReClassification function
SG_RNASeq Splicing graph elements predicted from BAM files
TxD Transcript x Protein Domain matrix: small matrix for examples