Differential Composition Analysis Transformed by a Similarity matrix

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Documentation for package ‘DCATS’ version 1.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

create_simMat	Generate similarity matrix with uniform confusion rate to none-self clusters
dcats_GLM	A Generalised linear model based likelihood ratio testing
detect_reference	Calculate a global phi for all cell types
getPhi	Calculate a global phi for all cell types
Haber2017	Count matrices of intestinal epithelial scRNA-seq data from three conditions
Kang2017	Count matrices of 8 pooled lupus patient samples within two conditions
knn_simMat	Calculate stochastic transition matrix between clusters from a KNN connection matrix
multinom_EM	An EM algorithm to fit a multinomial with maximum likelihood
Ren2021	Count matrix and metadata of a large COVID-19 scRNA-seq data cohort.
simulation	Simulated dataset with two conditions
simulator_base	Composition size simulator
svm_simMat	Calculate stochastic transition matrix between clusters from a data frame including information about clustering