Predicting binding site consensus from ranked DNA sequences


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Documentation for package ‘BCRANK’ version 1.67.0

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bcrank BCRANK: predicting binding site consensus from ranked DNA sequences
BCRANKmatch Class "BCRANKmatch"
BCRANKmatch-class Class "BCRANKmatch"
BCRANKout BCRANK results for USF1 ChIP-chip data
BCRANKresult Class "BCRANKresult"
BCRANKresult-class Class "BCRANKresult"
bcrankScore Class "BCRANKmatch"
BCRANKsearch Class "BCRANKsearch"
BCRANKsearch-class Class "BCRANKsearch"
consensus Class "BCRANKmatch"
fname Class "BCRANKresult"
matchingSites Report IUPAC consensus occurrences in a fasta file
matchVector Class "BCRANKmatch"
plot-method Class "BCRANKsearch"
pwm Class "BCRANKsearch"
searchPath Class "BCRANKsearch"
toptable Class "BCRANKresult"