Predicting binding site consensus from ranked DNA sequences
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Documentation for package ‘BCRANK’ version 1.67.0
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| bcrank | BCRANK: predicting binding site consensus from ranked DNA sequences |
| BCRANKmatch | Class "BCRANKmatch" |
| BCRANKmatch-class | Class "BCRANKmatch" |
| BCRANKout | BCRANK results for USF1 ChIP-chip data |
| BCRANKresult | Class "BCRANKresult" |
| BCRANKresult-class | Class "BCRANKresult" |
| bcrankScore | Class "BCRANKmatch" |
| BCRANKsearch | Class "BCRANKsearch" |
| BCRANKsearch-class | Class "BCRANKsearch" |
| consensus | Class "BCRANKmatch" |
| fname | Class "BCRANKresult" |
| matchingSites | Report IUPAC consensus occurrences in a fasta file |
| matchVector | Class "BCRANKmatch" |
| plot-method | Class "BCRANKsearch" |
| pwm | Class "BCRANKsearch" |
| searchPath | Class "BCRANKsearch" |
| toptable | Class "BCRANKresult" |