Adaptive Signature Selection and InteGratioN (ASSIGN)

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Documentation for package ‘ASSIGN’ version 1.41.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

assign.convergence	Check the convergence of the MCMC chain
assign.cv.output	Cross validation output
assign.mcmc	The Gibbs sampling algorithm to approximate the joint distribution of the model parameters
assign.output	Prediction/validation output for test data
assign.preprocess	Input data preprocessing
assign.summary	Summary of the model parameters estimated by the Gibbs sampling algorithm
assign.wrapper	ASSIGN All-in-one function
ComBat.step2	Perform the second step of ComBat
excludegenes	Exclude Gene List
gather_assign_results	Gather the ASSIGN results in a specific directory
geneList1	Pathway signature gene sets
gfrn_geneList	Pathway Signature Gene Lists
merge_drop	Combine two data frames
optimizeGFRN	Optimize GFRN gene lists lengths
pcaplot	Display a PCA Plot of the Data
runassignGFRN	Run optimized single pathway ASSIGN
testData1	Gene expression profiling from cancer patients (test dataset)
trainingData1	Gene expression profiling from cell line perturbation experiments (training dataset)