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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaseqR")
In most cases, you don't need to download the package archive at all.
metaseqR
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see metaseqR.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
Bioconductor version: 3.2
Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.
Author: Panagiotis Moulos <moulos at fleming.gr>
Maintainer: Panagiotis Moulos <moulos at fleming.gr>
Citation (from within R,
enter citation("metaseqR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaseqR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaseqR")
| RNA-Seq data analysis using mulitple statistical algorithms with metaseqR | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, ReportWriting, Software, WorkflowStep |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
| License | GPL (>= 3) |
| Depends | R (>= 2.13.0), EDASeq, DESeq, limma, qvalue |
| Imports | edgeR, NOISeq, baySeq, NBPSeq, biomaRt, utils, gplots, corrplot, vsn, brew, rjson, log4r |
| LinkingTo | |
| Suggests | BiocGenerics, GenomicRanges, rtracklayer, Rsamtools, survcomp, VennDiagram, knitr, zoo, RUnit, BiocInstaller, BSgenome, RSQLite |
| SystemRequirements | |
| Enhances | parallel, TCC, RMySQL |
| URL | http://www.fleming.gr |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | metaseqR_1.10.0.tar.gz |
| Windows Binary | metaseqR_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | metaseqR_1.10.0.tgz |
| Mac OS X 10.9 (Mavericks) | metaseqR_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/metaseqR/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/metaseqR/ |
| Package Downloads Report | Download Stats |
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