To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")

In most cases, you don't need to download the package archive at all.

mQTL.NMR

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see mQTL.NMR.

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Bioconductor version: 3.2

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

Author: Lyamine Hedjazi and Jean-Baptiste Cazier

Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>

Citation (from within R, enter citation("mQTL.NMR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mQTL.NMR")

 

PDF Frequently Asked Questions
PDF How to use the mQTL.NMR package
PDF   Reference Manual

Details

biocViews Cheminformatics, Genetics, Metabolomics, SNP, Software
Version 1.4.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 2.15.0)
Imports qtl, GenABEL, MASS, outliers, graphics, stats, utils
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL http://www.ican-institute.org/tools/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mQTL.NMR_1.4.0.tar.gz
Windows Binary mQTL.NMR_1.4.0.zip
Mac OS X 10.6 (Snow Leopard) mQTL.NMR_1.4.0.tgz
Mac OS X 10.9 (Mavericks) mQTL.NMR_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/mQTL.NMR/tree/release-3.2
Package Short Url http://bioconductor.org/packages/mQTL.NMR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center